Strain identifier

BacDive ID: 161376

Type strain: Yes

Species: Halococcus thailandensis

Strain history: S. Tanasupawat; Chulalongkorn Univ., Thailand; HDB5-2.

NCBI tax ID(s): 1227457 (strain), 335952 (species)

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General

@ref: 67770

BacDive-ID: 161376

keywords: genome sequence, 16S sequence, Archaea, mesophilic

description: Halococcus thailandensis JCM 13552 is a mesophilic archaeon that was isolated from Fish sauce fermentation in Thailand.

NCBI tax id

NCBI tax idMatching level
335952species
1227457strain

strain history

  • @ref: 67770
  • history: S. Tanasupawat; Chulalongkorn Univ., Thailand; HDB5-2.

doi: 10.13145/bacdive161376.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Halobacteriales
  • family: Halococcaceae
  • genus: Halococcus
  • species: Halococcus thailandensis
  • full scientific name: Halococcus thailandensis Namwong et al. 2007

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Halococcaceae

genus: Halococcus

species: Halococcus thailandensis

full scientific name: Halococcus thailandensis Namwong et al. 2007

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8(H2)

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Fish sauce fermentation in Thailand

taxonmaps

  • @ref: 69479
  • File name: preview.99_194320.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17821;96_70758;97_91893;98_124868;99_194320&stattab=map
  • Last taxonomy: Halococcus
  • 16S sequence: AB220647
  • Sequence Identity:
  • Total samples: 1
  • aquatic counts: 1

Sequence information

16S sequences

  • @ref: 67770
  • description: Halococcus thailandensis gene for 16S rRNA, partial sequence
  • accession: AB220647
  • length: 1384
  • database: ena
  • NCBI tax ID: 335952

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Halococcus thailandensis JCM 135522554235491draftimg1227457
67770Halococcus thailandensis JCM 13552GCA_000336715contigncbi1227457
66792Halococcus thailandensis JCM 135521227457.3wgspatric1227457

GC content

  • @ref: 67770
  • GC-content: 60.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 13552, BCC 20213, CGMCC 1.8493, PCU 278

straininfo link

  • @ref: 113379
  • straininfo: 310990

literature

  • topic: Phylogeny
  • Pubmed-ID: 17911282
  • title: Halococcus thailandensis sp. nov., from fish sauce in Thailand.
  • authors: Namwong S, Tanasupawat S, Visessanguan W, Kudo T, Itoh T
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65218-0
  • year: 2007
  • mesh: Aerobiosis, Base Composition, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fish Products/*microbiology, Food Microbiology, Genes, rRNA, Glycolipids/analysis, Halococcus/chemistry/*classification/genetics/*isolation & purification, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Temperature, Thailand, Vitamin K 2/analysis
  • topic2: Biotechnology

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113379Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID310990.1