Strain identifier
BacDive ID: 161359
Type strain: 
Species: Mycobacterium arupense
Strain history: T. Ezaki CST 7052.
NCBI tax ID(s): 342002 (species)
version 9 (current version)
General
@ref: 67770
BacDive-ID: 161359
keywords: 16S sequence, Bacteria
description: Mycobacterium arupense JCM 13452 is a bacterium that was isolated from Sputum of a 60-year-old Japanese man with abnormal shadow by indirect X-ray.
NCBI tax id
- NCBI tax id: 342002
- Matching level: species
strain history
- @ref: 67770
- history: T. Ezaki CST 7052.
doi: 10.13145/bacdive161359.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium arupense
- full scientific name: Mycobacterium arupense Cloud et al. 2006
synonyms
- @ref: 20215
- synonym: Mycolicibacter arupensis
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycolicibacter
species: Mycolicibacter arupensis
full scientific name: Mycolicibacter arupensis (Cloud et al. 2006) Gupta et al. 2018
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 35
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sputum of a 60-year-old Japanese man with abnormal shadow by indirect X-ray
taxonmaps
- @ref: 69479
- File name: preview.99_473.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_312;97_346;98_391;99_473&stattab=map
- Last taxonomy: Mycolicibacter
- 16S sequence: AB239926
- Sequence Identity:
- Total samples: 3339
- soil counts: 1370
- aquatic counts: 1264
- animal counts: 528
- plant counts: 177
Sequence information
16S sequences
- @ref: 67770
- description: Mycobacterium arupense gene for 16S rRNA, partial sequence, strain:CST7052 (= GTC2730)
- accession: AB239926
- length: 1443
- database: nuccore
- NCBI tax ID: 342002
GC content
- @ref: 67770
- GC-content: 67
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67770
culture collection no.: JCM 13452, GTC 2730
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |