General

@ref: 67770

BacDive-ID: 161281

keywords: genome sequence, 16S sequence, Bacteria, thermophilic

description: Geobacillus kaustophilus JCM 12893 is a thermophilic bacterium that was isolated from Mud from the Challenger Deep in the Mariana Trench .

NCBI tax id

• NCBI tax id: 1462
• Matching level: species

strain history

• @ref: 67770
• history: H. Takami HTA426.

doi: 10.13145/bacdive161281.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacillota
• domain: Bacteria
• phylum: Bacillota
• class: Bacilli
• order: Caryophanales
• family: Bacillaceae
• genus: Geobacillus
• species: Geobacillus kaustophilus
• full scientific name: Geobacillus kaustophilus (Priest et al. 1989 ex Prickett 1928) Nazina et al. 2001

• synonyms

  • @ref: 20215
  • synonym: Bacillus kaustophilus

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Geobacillus

species: Geobacillus kaustophilus

full scientific name: Geobacillus kaustophilus (Priest et al. 1989) Nazina et al. 2001

type strain: no

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 60
• range: thermophilic

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Mud from the Challenger Deep in the Mariana Trench (10,897 m in depth)

taxonmaps

• @ref: 69479
• File name: preview.99_181489.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_79;96_191;97_207;98_118335;99_181489&stattab=map
• Last taxonomy: Geobacillus
• 16S sequence: AB002645
• Sequence Identity:
• Total samples: 29
• aquatic counts: 8
• animal counts: 21

Sequence information

16S sequences

• @ref: 67770
• description: Low G+C Gram-positive bacterium HTA426 gene for 16S rRNA, partial sequence
• accession: AB002645
• length: 1442
• database: ena
• NCBI tax ID: 338793

Genome sequences

• @ref: 67770
• description: Geobacillus kaustophilus HTA426
• accession: GCA_000009785
• assembly level: complete
• database: ncbi
• NCBI tax ID: 235909

GC content

• @ref: 67770
• GC-content: 51.7
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 12893

straininfo link

• @ref: 113334
• straininfo: 231823

literature

• topic: Metabolism
• Pubmed-ID: 22484932
• title: Detection and characterization of a thermophilic biotin biosynthetic enzyme, 7-keto-8-aminopelargonic acid synthase, from various thermophiles.
• authors: Kubota T, Izumi Y
• journal: Biosci Biotechnol Biochem
• DOI: 10.1271/bbb.110807
• year: 2012
• mesh: Acetyltransferases/metabolism, Acyl Coenzyme A/metabolism, Acyltransferases/genetics/*metabolism, Alanine/metabolism, Amino Acid Sequence, Amino Acids/metabolism, Bacterial Proteins/genetics/*metabolism, Biotin/*biosynthesis/genetics, Cloning, Molecular, Enzyme Stability, Escherichia coli, Gene Expression, Glycine/metabolism, Gram-Positive Bacteria/*enzymology/genetics, Hot Temperature, Keto Acids/metabolism, Molecular Sequence Data, Open Reading Frames, Recombinant Proteins/genetics/metabolism, Sequence Alignment, Substrate Specificity
• topic2: Enzymology

Reference