Strain identifier
BacDive ID: 161247
Type strain: 
Species: Glaciecola nitratireducens
Strain history: J. Chun FR1064.
NCBI tax ID(s): 300231 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161247
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Glaciecola nitratireducens JCM 12485 is a mesophilic bacterium that was isolated from Surface seawater sample collected off Jeju Island.
NCBI tax id
- NCBI tax id: 300231
- Matching level: species
strain history
- @ref: 67770
- history: J. Chun FR1064.
doi: 10.13145/bacdive161247.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Glaciecola
- species: Glaciecola nitratireducens
- full scientific name: Glaciecola nitratireducens Baik et al. 2006
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Glaciecola
species: Glaciecola nitratireducens
full scientific name: Glaciecola nitratireducens Baik et al. 2006
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Surface seawater sample collected off Jeju Island
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_2604.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_1394;97_1661;98_2018;99_2604&stattab=map
- Last taxonomy: Glaciecola nitratireducens subclade
- 16S sequence: AY787042
- Sequence Identity:
- Total samples: 1616
- soil counts: 15
- aquatic counts: 1549
- animal counts: 50
- plant counts: 2
Sequence information
16S sequences
- @ref: 67770
- description: Glaciecola nitratireducens strain FR1064 16S ribosomal RNA gene, partial sequence
- accession: AY787042
- length: 1397
- database: ena
- NCBI tax ID: 1085623
Genome sequences
- @ref: 67770
- description: Glaciecola nitratireducens FR1064
- accession: GCA_000226565
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1085623
GC content
- @ref: 67770
- GC-content: 44
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 67770
culture collection no.: JCM 12485, IMSNU 60008, KCTC 12276
straininfo link
- @ref: 113310
- straininfo: 133520
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16957118 | Glaciecola nitratireducens sp. nov., isolated from seawater. | Baik KS, Park YD, Seong CN, Kim EM, Bae KS, Chun J | Int J Syst Evol Microbiol | 10.1099/ijs.0.64330-0 | 2006 | Alteromonadaceae/classification/genetics/*isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/*analysis, Seawater/*microbiology, *Water Microbiology | Genetics |
| Phylogeny | 30608230 | Glaciecola amylolytica sp. nov., an amylase-producing bacterium isolated from seawater. | Xiao YK, Yan ZF, Kim Y, Lee HM, Trinh H, Yang JE, Won KH, Yi TH, Kook M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003222 | 2019 | Alteromonadaceae/*classification/isolation & purification, Amylases, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113310 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID133520.1 |