Strain identifier
BacDive ID: 161212
Type strain: 
Species: Ligilactobacillus salivarius
Strain history: T. Mitsuoka.
NCBI tax ID(s): 1624 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161212
keywords: genome sequence, Bacteria, mesophilic
description: Ligilactobacillus salivarius JCM 1230 is a mesophilic bacterium that was isolated from Chicken intestine.
NCBI tax id
- NCBI tax id: 1624
- Matching level: species
strain history
- @ref: 67770
- history: T. Mitsuoka.
doi: 10.13145/bacdive161212.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus salivarius
- full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus salivarius subsp. salicinius 20215 Lactobacillus salivarius
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus salivarius
full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 97.503 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.957 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Chicken intestine
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ligilactobacillus salivarius JCM 1230 | GCA_002079405 | scaffold | ncbi | 1624 |
| 66792 | Lactobacillus salivarius strain JCM 1230 | 1624.49 | wgs | patric | 1624 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 98.705 | no |
| gram-positive | yes | 96.611 | no |
| anaerobic | no | 71.37 | no |
| halophile | yes | 87.171 | no |
| spore-forming | no | 95.609 | no |
| thermophile | no | 97.041 | yes |
| glucose-util | yes | 92.964 | no |
| aerobic | no | 96.429 | no |
| motile | no | 96.837 | no |
| glucose-ferment | yes | 87.301 | no |
External links
@ref: 67770
culture collection no.: JCM 1230
straininfo link
- @ref: 113280
- straininfo: 63154
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15611608 | Effects of two probiotic Lactobacillus strains on jejunal and cecal microbiota of broiler chicken under acute heat stress condition as revealed by molecular analysis of 16S rRNA genes. | Lan PT, Sakamoto M, Benno Y | Microbiol Immunol | 10.1111/j.1348-0421.2004.tb03620.x | 2004 | Age Factors, Animals, Cecum/*microbiology, Chickens/*microbiology, Cluster Analysis, Colony Count, Microbial/veterinary, DNA, Bacterial/chemistry/genetics, Heat Stress Disorders/*microbiology, Jejunum/*microbiology, Lactobacillus/genetics/*physiology, Polymerase Chain Reaction/veterinary, Polymorphism, Restriction Fragment Length, Probiotics/*pharmacology, RNA, Ribosomal, 16S/*analysis/chemistry/genetics, Random Allocation, Statistics, Nonparametric | Stress |
| Metabolism | 20181862 | Selected microbial groups and short-chain fatty acids profile in a simulated chicken cecum supplemented with two strains of Lactobacillus. | Meimandipour A, Shuhaimi M, Soleimani AF, Azhar K, Hair-Bejo M, Kabeir BM, Javanmard A, Muhammad Anas O, Yazid AM | Poult Sci | 10.3382/ps.2009-00495 | 2010 | Animals, Cecum/*microbiology, *Chickens, Colony Count, Microbial, Fatty Acids, Volatile/*metabolism, Lactates/chemistry/metabolism, Lactobacillus/*classification, Probiotics/*therapeutic use | Phylogeny |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 113280 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID63154.1 |