Strain identifier
BacDive ID: 161212
Type strain: 
Species: Ligilactobacillus salivarius
Strain history: T. Mitsuoka.
NCBI tax ID(s): 1624 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 161212
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Ligilactobacillus salivarius JCM 1230 is a mesophilic, Gram-positive bacterium that was isolated from Chicken intestine.
NCBI tax id
- NCBI tax id: 1624
- Matching level: species
strain history
- @ref: 67770
- history: T. Mitsuoka.
doi: 10.13145/bacdive161212.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus salivarius
- full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus salivarius 20215 Lactobacillus salivarius subsp. salicinius
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus salivarius
full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
type strain: no
Morphology
cell morphology
- @ref: 125438
- gram stain: positive
- confidence: 93.904
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: facultative anaerobe
- confidence: 94.7
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Chicken intestine
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 124043 | Lactobacillus salivarius subsp. salicinius gene for 16S rRNA, partial sequence, strain: JCM 1230. | AB289295 | 664 | nuccore | 1624 |
| 124043 | Lactobacillus salivarius subsp. salicinius strain JCM 1230 16S ribosomal RNA gene, partial sequence. | AY137589 | 1519 | nuccore | 1624 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ligilactobacillus salivarius JCM 1230 | GCA_002079405 | scaffold | ncbi | 1624 |
| 66792 | Lactobacillus salivarius strain JCM 1230 | 1624.49 | wgs | patric | 1624 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 93.904 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 78.829 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 95.195 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.1 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.528 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 89 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 55.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 53.3 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 77.4 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | facultative anaerobe | 94.7 |
External links
@ref: 67770
culture collection no.: JCM 1230
straininfo link
- @ref: 113280
- straininfo: 63154
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15611608 | Effects of two probiotic Lactobacillus strains on jejunal and cecal microbiota of broiler chicken under acute heat stress condition as revealed by molecular analysis of 16S rRNA genes. | Lan PT, Sakamoto M, Benno Y | Microbiol Immunol | 10.1111/j.1348-0421.2004.tb03620.x | 2004 | Age Factors, Animals, Cecum/*microbiology, Chickens/*microbiology, Cluster Analysis, Colony Count, Microbial/veterinary, DNA, Bacterial/chemistry/genetics, Heat Stress Disorders/*microbiology, Jejunum/*microbiology, Lactobacillus/genetics/*physiology, Polymerase Chain Reaction/veterinary, Polymorphism, Restriction Fragment Length, Probiotics/*pharmacology, RNA, Ribosomal, 16S/*analysis/chemistry/genetics, Random Allocation, Statistics, Nonparametric | Stress |
| Metabolism | 20181862 | Selected microbial groups and short-chain fatty acids profile in a simulated chicken cecum supplemented with two strains of Lactobacillus. | Meimandipour A, Shuhaimi M, Soleimani AF, Azhar K, Hair-Bejo M, Kabeir BM, Javanmard A, Muhammad Anas O, Yazid AM | Poult Sci | 10.3382/ps.2009-00495 | 2010 | Animals, Cecum/*microbiology, *Chickens, Colony Count, Microbial, Fatty Acids, Volatile/*metabolism, Lactates/chemistry/metabolism, Lactobacillus/*classification, Probiotics/*therapeutic use | Phylogeny |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 113280 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID63154.1 |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |