Strain identifier
BacDive ID: 161187
Type strain: 
Species: Caballeronia sordidicola
Strain history: Y.-W. Lim SNU 020123.
NCBI tax ID(s): 196367 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161187
keywords: 16S sequence, Bacteria, mesophilic
description: Caballeronia sordidicola JCM 11779 is a mesophilic bacterium that was isolated from White-rot fungus Phanerochaete sordida.
NCBI tax id
- NCBI tax id: 196367
- Matching level: species
strain history
- @ref: 67770
- history: Y.-W. Lim SNU 020123.
doi: 10.13145/bacdive161187.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Caballeronia
- species: Caballeronia sordidicola
- full scientific name: Caballeronia sordidicola (Lim et al. 2003) Dobritsa and Samadpour 2016
synonyms
@ref synonym 20215 Burkholderia sordidicola 20215 Paraburkholderia sordidicola
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Caballeronia
species: Caballeronia sordidicola
full scientific name: Caballeronia sordidicola (Lim et al. 2003) Dobritsa and Samadpour 2016
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-8
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: White-rot fungus Phanerochaete sordida
- host species: Phanerochaete sordida
taxonmaps
- @ref: 69479
- File name: preview.99_4747.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_18;97_211;98_236;99_4747&stattab=map
- Last taxonomy: Burkholderia
- 16S sequence: AF512827
- Sequence Identity:
- Total samples: 1110
- soil counts: 704
- aquatic counts: 101
- animal counts: 95
- plant counts: 210
Sequence information
16S sequences
- @ref: 67770
- description: Burkholderia sordicola strain SNU 020123 16S ribosomal RNA gene, partial sequence
- accession: AF512827
- length: 1469
- database: ena
- NCBI tax ID: 196367
External links
@ref: 67770
culture collection no.: JCM 11779, KCTC 12082
literature
- topic: Phylogeny
- Pubmed-ID: 13130061
- title: Burkholderia sordidicola sp. nov., isolated from the white-rot fungus Phanerochaete sordida.
- authors: Lim YW, Baik KS, Han SK, Kim SB, Bae KS
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.02456-0
- year: 2003
- mesh: Base Composition, Burkholderia/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Microscopy, Electron, Molecular Sequence Data, *Phanerochaete, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |