Strain identifier

BacDive ID: 161148

Type strain: No

Species: Microtetraspora malaysiensis

Strain history: Y. Nakajima Y25-12.

NCBI tax ID(s): 161358 (species)

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General

@ref: 67770

BacDive-ID: 161148

keywords: 16S sequence, Bacteria, mesophilic

description: Microtetraspora malaysiensis JCM 11280 is a mesophilic bacterium that was isolated from Soil from steep hill dipterocarp forest at the Virgin Jungle Reserve.

NCBI tax id

  • NCBI tax id: 161358
  • Matching level: species

strain history

  • @ref: 67770
  • history: Y. Nakajima Y25-12.

doi: 10.13145/bacdive161148.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Microtetraspora
  • species: Microtetraspora malaysiensis
  • full scientific name: Microtetraspora malaysiensis Nakajima et al. 2004

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptosporangiales

family: Streptosporangiaceae

genus: Microtetraspora

species: Microtetraspora malaysiensis

full scientific name: Microtetraspora malaysiensis Nakajima et al. 2004

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(III,VIII-H4), MK-9(H2)

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil from steep hill dipterocarp forest at the Virgin Jungle Reserve
  • geographic location: Gombak, Selangor
  • country: Malaysia
  • origin.country: MYS
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_4298.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_910;97_2611;98_3235;99_4298&stattab=map
  • Last taxonomy: Microtetraspora malaysiensis
  • 16S sequence: AB062385
  • Sequence Identity:
  • Total samples: 44
  • soil counts: 30
  • aquatic counts: 5
  • animal counts: 3
  • plant counts: 6

Sequence information

16S sequences

  • @ref: 67770
  • description: Microtetraspora malaysiensis gene for 16S rRNA, partial sequence, strain:Y25-12
  • accession: AB062385
  • length: 1444
  • database: ena
  • NCBI tax ID: 161358

GC content

  • @ref: 67770
  • GC-content: 69
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 11280

straininfo link

  • @ref: 113234
  • straininfo: 231920

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113234Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID231920.1