Strain identifier
BacDive ID: 161127
Type strain: 
Species: Halobacterium sp.
Strain history: ATCC 700922 <-- S. DasSarma <-- F. Doolittle NRC-1.
NCBI tax ID(s): 2243 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161127
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Halobacterium sp. JCM 11081 is a mesophilic archaeon of the family Halobacteriaceae.
NCBI tax id
- NCBI tax id: 2243
- Matching level: species
strain history
- @ref: 67770
- history: ATCC 700922 <-- S. DasSarma <-- F. Doolittle NRC-1.
doi: 10.13145/bacdive161127.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Halobacteriaceae
- genus: Halobacterium
- species: Halobacterium sp.
- full scientific name: Halobacterium Elazari-Volcani 1957 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Halobacter
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halobacteriaceae
genus: Halobacterium
species: Halobacterium sp.
full scientific name: Halobacterium sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_187322.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17654;96_68930;97_89585;98_121877;99_187322&stattab=map
- Last taxonomy: Halobacterium salinarum
- 16S sequence: AB603514
- Sequence Identity:
- Total samples: 33
- soil counts: 5
- aquatic counts: 26
- animal counts: 2
Sequence information
16S sequences
- @ref: 67770
- description: Halobacterium sp. NRC-1 gene for 16S rRNA, partial sequence, strain: JCM 11081
- accession: AB603514
- length: 1449
- database: ena
- NCBI tax ID: 64091
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Halobacterium salinarum NRC-1 NRC-1; ATCC 700922 | GCA_000006805 | complete | ncbi | 64091 |
| 66792 | Halobacterium sp. NRC-1 | 64091.14 | complete | patric | 64091 |
| 66792 | Halobacterium salinarum NRC-1 strain NRC-1; ATCC 700922 | 64091.30 | plasmid | patric | 64091 |
| 66792 | Halobacterium salinarum NRC-1 strain NRC-1; ATCC 700922 | 64091.31 | plasmid | patric | 64091 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | no | 97.343 | no |
| anaerobic | no | 94.365 | no |
| halophile | yes | 80.764 | no |
| spore-forming | no | 93.613 | no |
| glucose-util | yes | 85.677 | no |
| thermophile | no | 88.384 | no |
| flagellated | no | 95.446 | no |
| aerobic | yes | 75.708 | no |
| motile | no | 80.468 | no |
| glucose-ferment | no | 79.221 | no |
External links
@ref: 67770
culture collection no.: JCM 11081, ATCC 700922
straininfo link
- @ref: 113215
- straininfo: 44210
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113215 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID44210.1 |