Strain identifier

BacDive ID: 16109

Type strain: Yes

Species: Streptomyces viridochromogenes

Strain history: KCC S-0265 <-- IFO 3113 <-- CBS 140.20 <-- S. A. Waksman.

NCBI tax ID(s): 1938 (species)

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General

@ref: 9321

BacDive-ID: 16109

DSM-Number: 40110

keywords: 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces viridochromogenes DSM 40110 is a spore-forming, mesophilic bacterium that builds an aerial mycelium.

NCBI tax id

  • NCBI tax id: 1938
  • Matching level: species

strain history

@refhistory
9321<- E.B. Shirling, ISP <- W.H. Trejo, Squibb & Sons <- NRRL <- CBS
67770KCC S-0265 <-- IFO 3113 <-- CBS 140.20 <-- S. A. Waksman.

doi: 10.13145/bacdive16109.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces viridochromogenes
  • full scientific name: Streptomyces viridochromogenes (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces viridochromogenes

@ref: 9321

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces viridochromogenes

full scientific name: Streptomyces viridochromogenes (Krainsky 1914) Waksman and Henrici 1948

type strain: yes

Morphology

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
19404yesAerial MyceliumBlue greyISP 2
19404yesAerial MyceliumBlue greyISP 3
19404yesAerial MyceliumBlue greyISP 4
19404yesAerial MyceliumBlue greyISP 5
19404yesAerial MyceliumBlue greyISP 6
19404yesAerial MyceliumBlue greyISP 7

Culture and growth conditions

culture medium

  • @ref: 9321
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9321positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

  • @ref: 19404
  • spore description: Formation of spore chains: spira, spore surface: spiny
  • spore formation: yes

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8), MK-9(H6)

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_408.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_408&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: DQ442555
  • Sequence Identity:
  • Total samples: 50
  • soil counts: 30
  • animal counts: 18
  • plant counts: 2

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
93211Risk group (German classification)
194041Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces viridochromogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 4856D44409121ena1938
20218Streptomyces viridochromogenes gene for 16S rRNA, partial sequence, strain: NBRC 12338AB1840751475ena1938
20218Streptomyces viridochromogenes gene for 16S rRNA, partial sequence, strain: NBRC 13347AB1848731460ena1938
20218Streptomyces viridochromogenes gene for 16S rRNA, partial sequence, strain: NBRC 3113AB1847281477ena1938
20218Streptomyces viridochromogenes strain NRRL B-1511T 16S ribosomal RNA gene, partial sequenceDQ4425551500ena1938
20218Streptomyces viridochromogenes strain NRRL B-1511 16S ribosomal RNA gene, partial sequenceKJ027123483ena1938

GC content

  • @ref: 67770
  • GC-content: 74.3
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 9321

culture collection no.: DSM 40110, ATCC 14920, CBS 648.72, ETH 9523, IFO 13347, ISP 5110, NBRC 13347, NRRL B-1511, RIA 1308, JCM 4265, BCRC 13769, CBS 140.20, CECT 3216, CGMCC 4.0640, CGMCC 4.1081, CGMCC 4.1751, HAMBI 1023, HUT 6030, IFO 12338, IFO 3113, JCM 4856, NBIMCC 3327, NBRC 12338, NBRC 3113, NCIMB 9597, VKM Ac-629

straininfo link

  • @ref: 85175
  • straininfo: 389318

literature

  • topic: Phylogeny
  • Pubmed-ID: 14042949
  • title: STREPTOMYCES SPECIES COMPRISING THE BLUE-SPORE SERIES.
  • authors: TREJO WH, BENNETT RE
  • journal: J Bacteriol
  • DOI: 10.1128/jb.85.3.676-690.1963
  • year: 1963
  • mesh: *Classification, *Color, *Physiology, *Spores, Bacterial, *Sprains and Strains, *Streptomyces

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9321Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40110)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40110
19404Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40110.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85175Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389318.1StrainInfo: A central database for resolving microbial strain identifiers