Strain identifier
BacDive ID: 16105
Type strain: 
Species: Streptomyces virginiae
Strain history: KCC S-0974 <-- NRRL 3630 <-- Upjohn Co., USA; UC 5108.
NCBI tax ID(s): 1961 (species)
General
@ref: 393
BacDive-ID: 16105
DSM-Number: 916
keywords: 16S sequence, Bacteria, antibiotic compound production
description: Streptomyces virginiae DSM 916 is a bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
- NCBI tax id: 1961
- Matching level: species
strain history
| @ref | history |
|---|---|
| 393 | <- NRRL <- Upjohn Comp., UC 5108 (Streptomyces virginiae var. lipoxae) |
| 67770 | KCC S-0974 <-- NRRL 3630 <-- Upjohn Co., USA; UC 5108. |
doi: 10.13145/bacdive16105.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces virginiae
- full scientific name: Streptomyces virginiae Grundy et al. 1952 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Streptomyces cinnamonensis
@ref: 393
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces virginiae
full scientific name: Streptomyces virginiae Grundy et al. 1952 emend. Nouioui et al. 2018
type strain: no
Culture and growth conditions
culture medium
- @ref: 393
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 393 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
compound production
- @ref: 393
- compound: lipoxamycin
metabolite production
- @ref: 67770
- metabolite: lipoxamycin
- production: yes
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 393 | soil |
| 67770 | Soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 393
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Streptomyces virginiae DNA for 16S rRNA, strain JCM 4974
- accession: D85117
- length: 1514
- database: nuccore
- NCBI tax ID: 1961
External links
@ref: 393
culture collection no.: DSM 916, JCM 4974, NRRL 3630, UC 5108, CBS 417.70, NCIMB 10450
straininfo link
- @ref: 85171
- straininfo: 47284
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 393 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 916) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-916 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 85171 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47284.1 | StrainInfo: A central database for resolving microbial strain identifiers |