Strain identifier
BacDive ID: 161046
Type strain: 
Species: Collinsella aerofaciens
Strain history: Y. Benno RCA55-19.
NCBI tax ID(s): 74426 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161046
keywords: 16S sequence, Bacteria, mesophilic
description: Collinsella aerofaciens JCM 10781 is a mesophilic bacterium that was isolated from Human feces.
NCBI tax id
- NCBI tax id: 74426
- Matching level: species
strain history
- @ref: 67770
- history: Y. Benno RCA55-19.
doi: 10.13145/bacdive161046.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Coriobacteriia
- order: Coriobacteriales
- family: Coriobacteriaceae
- genus: Collinsella
- species: Collinsella aerofaciens
- full scientific name: Collinsella aerofaciens (Eggerth 1935) Kageyama et al. 1999
synonyms
@ref synonym 20215 Bacteroides aerofaciens 20215 Eubacterium aerofaciens
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Coriobacteriia
order: Coriobacteriales
family: Coriobacteriaceae
genus: Collinsella
species: Collinsella aerofaciens
full scientific name: Collinsella aerofaciens (Eggerth 1935) Kageyama et al. 1999
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human feces
taxonmaps
- @ref: 69479
- File name: preview.99_1317.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_147;96_763;97_889;98_1042;99_1317&stattab=map
- Last taxonomy: Collinsella aerofaciens subclade
- 16S sequence: LC153557
- Sequence Identity:
- Total samples: 230952
- soil counts: 2340
- aquatic counts: 10797
- animal counts: 216978
- plant counts: 837
Sequence information
16S sequences
- @ref: 67770
- description: Collinsella aerofaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 10781
- accession: LC153557
- length: 1456
- database: ena
- NCBI tax ID: 74426
External links
@ref: 67770
culture collection no.: JCM 10781
straininfo link
- @ref: 113171
- straininfo: 111585
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113171 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID111585.1 |