Strain identifier
BacDive ID: 160967
Type strain:
Species: Ligilactobacillus agilis
Strain history: T. Mitsuoka ChN-I-2-6.
NCBI tax ID(s): 1601 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 160967
keywords: 16S sequence, Bacteria, mesophilic
description: Ligilactobacillus agilis JCM 1050 is a mesophilic bacterium that was isolated from Chicken intestine.
NCBI tax id
- NCBI tax id: 1601
- Matching level: species
strain history
- @ref: 67770
- history: T. Mitsuoka ChN-I-2-6.
doi: 10.13145/bacdive160967.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus agilis
- full scientific name: Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus agilis
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus agilis
full scientific name: Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Chicken intestine
taxonmaps
- @ref: 69479
- File name: preview.99_6918.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_3250;97_3988;98_5089;99_6918&stattab=map
- Last taxonomy: Ligilactobacillus agilis subclade
- 16S sequence: LC260017
- Sequence Identity:
- Total samples: 41290
- soil counts: 1642
- aquatic counts: 1961
- animal counts: 36795
- plant counts: 892
Sequence information
16S sequences
- @ref: 67770
- description: Lactobacillus agilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1050
- accession: LC260017
- length: 1513
- database: ena
- NCBI tax ID: 1601
External links
@ref: 67770
culture collection no.: JCM 1050, ATCC 43616
straininfo link
- @ref: 113130
- straininfo: 41941
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
113130 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID41941.1 |