Strain identifier

BacDive ID: 160967

Type strain: No

Species: Ligilactobacillus agilis

Strain history: T. Mitsuoka ChN-I-2-6.

NCBI tax ID(s): 1601 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9 (current version):
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 9 (current version)

General

@ref: 67770

BacDive-ID: 160967

keywords: 16S sequence, Bacteria

description: Ligilactobacillus agilis JCM 1050 is a bacterium that was isolated from Chicken intestine.

NCBI tax id

  • NCBI tax id: 1601
  • Matching level: species

strain history

  • @ref: 67770
  • history: T. Mitsuoka ChN-I-2-6.

doi: 10.13145/bacdive160967.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Ligilactobacillus
  • species: Ligilactobacillus agilis
  • full scientific name: Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus agilis

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Ligilactobacillus

species: Ligilactobacillus agilis

full scientific name: Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Chicken intestine

taxonmaps

  • @ref: 69479
  • File name: preview.99_6918.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_3250;97_3988;98_5089;99_6918&stattab=map
  • Last taxonomy: Ligilactobacillus agilis subclade
  • 16S sequence: LC260017
  • Sequence Identity:
  • Total samples: 41290
  • soil counts: 1642
  • aquatic counts: 1961
  • animal counts: 36795
  • plant counts: 892

Sequence information

16S sequences

  • @ref: 67770
  • description: Lactobacillus agilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1050
  • accession: LC260017
  • length: 1513
  • database: nuccore
  • NCBI tax ID: 1601

External links

@ref: 67770

culture collection no.: JCM 1050, ATCC 43616

straininfo link

  • @ref: 113130
  • straininfo: 41941

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113130Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID41941.1