Strain identifier
BacDive ID: 160901
Type strain: 
Species: Shewanella benthica
Strain history: Y. Nogi DB21MT-2.
NCBI tax ID(s): 43661 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 160901
keywords: 16S sequence, Bacteria, psychrophilic
description: Shewanella benthica JCM 10264 is a psychrophilic bacterium that was isolated from Deep sea sediment of the Mariana Trench, Challenger Deep .
NCBI tax id
- NCBI tax id: 43661
- Matching level: species
strain history
- @ref: 67770
- history: Y. Nogi DB21MT-2.
doi: 10.13145/bacdive160901.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella benthica
- full scientific name: Shewanella benthica MacDonell and Colwell 1986
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella benthica
full scientific name: Shewanella benthica MacDonell and Colwell 1986
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 10
- range: psychrophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-8, Q-7
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Deep sea sediment of the Mariana Trench, Challenger Deep (-10,898 m)
- country: Pacific Ocean
taxonmaps
- @ref: 69479
- File name: preview.99_6186.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_759;97_1185;98_1416;99_6186&stattab=map
- Last taxonomy: Shewanella
- 16S sequence: AB008796
- Sequence Identity:
- Total samples: 463
- soil counts: 4
- aquatic counts: 409
- animal counts: 50
Sequence information
16S sequences
- @ref: 67770
- description: Shewanella benthica gene for 16S rRNA, complete sequence
- accession: AB008796
- length: 1516
- database: ena
- NCBI tax ID: 43661
GC content
- @ref: 67770
- GC-content: 48.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67770
culture collection no.: JCM 10264
straininfo link
- @ref: 113076
- straininfo: 111438
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113076 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID111438.1 |