Strain identifier
BacDive ID: 160849
Type strain:
Species: Lactobacillus helveticus
Strain history: T. Mitsuoka S1-16 ("Lactobacillus jugurti") <-- M. E. Sharpe J-12 <-- ATCC 8001 (Lactobacillus sp.) <-- M. Rogosa (Lactobacillus bulgaricus).
NCBI tax ID(s): 1587 (species)
General
@ref: 67770
BacDive-ID: 160849
keywords: genome sequence, Bacteria, mesophilic
description: Lactobacillus helveticus JCM 1005 is a mesophilic bacterium of the family Lactobacillaceae.
NCBI tax id
- NCBI tax id: 1587
- Matching level: species
strain history
- @ref: 67770
- history: T. Mitsuoka S1-16 ("Lactobacillus jugurti") <-- M. E. Sharpe J-12 <-- ATCC 8001 (Lactobacillus sp.) <-- M. Rogosa (Lactobacillus bulgaricus).
doi: 10.13145/bacdive160849.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactobacillus
- species: Lactobacillus helveticus
- full scientific name: Lactobacillus helveticus (Orla-Jensen 1919) Bergey et al. 1925 (Approved Lists 1980)
synonyms
@ref synonym 20215 Thermobacterium helveticum 20215 Lactobacillus suntoryeus
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus helveticus
full scientific name: Lactobacillus helveticus (Orla-Jensen 1919) Bergey et al. 1925
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 93.554 | |
69480 | 100 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.998 |
69481 | no | 100 |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lactobacillus helveticus JCM 1005 | GCA_015698145 | contig | ncbi | 1587 |
66792 | Lactobacillus helveticus strain JCM 1005 | 1587.657 | wgs | patric | 1587 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 96.305 | no |
gram-positive | yes | 93.992 | no |
anaerobic | yes | 69.163 | no |
aerobic | no | 98.837 | no |
halophile | yes | 86.338 | no |
spore-forming | no | 95.676 | no |
thermophile | no | 99.263 | yes |
glucose-util | yes | 91.042 | no |
flagellated | no | 98.37 | no |
glucose-ferment | yes | 91.296 | no |
External links
@ref: 67770
culture collection no.: JCM 1005, ATCC 8001, CECT 404, NCFB 103, NCIMB 8115
straininfo link
- @ref: 113043
- straininfo: 11473
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
113043 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID11473.1 |