Strain identifier
BacDive ID: 160808
Type strain: 
Species: Tepiditoga spiralis
Strain Designation: sy52
Strain history: <- K. Mori, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Kisarazu, Japan; sy52 <- K. Mori {2012}
NCBI tax ID(s): 2108365 (species)
version 8.1 (current version)
General
@ref: 67745
BacDive-ID: 160808
DSM-Number: 105848
keywords: genome sequence, Bacteria, anaerobe, thermophilic, Gram-negative
description: Tepiditoga spiralis sy52 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from deep-sea hydrothermal vent chimney.
NCBI tax id
- NCBI tax id: 2108365
- Matching level: species
strain history
- @ref: 67745
- history: <- K. Mori, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Kisarazu, Japan; sy52 <- K. Mori {2012}
doi: 10.13145/bacdive160808.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/thermotogota
- domain: Bacteria
- phylum: Thermotogota
- class: Thermotogae
- order: Petrotogales
- family: Petrotogaceae
- genus: Tepiditoga
- species: Tepiditoga spiralis
- full scientific name: Tepiditoga spiralis Mori et al. 2021
@ref: 67745
domain: Bacteria
phylum: Thermotogae
class: Thermotogae
order: Petrotogales
family: Petrotogaceae
genus: Tepiditoga
species: Tepiditoga spiralis
full scientific name: Tepiditoga spiralis Mori et al. 2020
strain designation: sy52
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.936
Culture and growth conditions
culture medium
- @ref: 67745
- name: KOSMOTOGA OLEARIA MEDIUM (DSMZ Medium 1163)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1163
- composition: Name: KOSMOTOGA OLEARIA MEDIUM (DSMZ Medium 1163; with strain-specific modifications) Composition: PIPES 6.6271 g/l Yeast extract 4.9456 g/l Maltose 4.9456 g/l Na-thiosulfate 1.48368 g/l MgCl2 x 2 H2O 0.890208 g/l L-Cysteine HCl x H2O 0.49456 g/l KH2PO4 0.445104 g/l KCl 0.326409 g/l NH4Cl 0.24728 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l CoSO4 x 7 H2O 0.00178042 g/l ZnSO4 x 7 H2O 0.00178042 g/l FeSO4 x 7 H2O 0.00098912 g/l CaCl2 x 2 H2O 0.00098912 g/l Sodium resazurin 0.00049456 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l CuSO4 x 5 H2O 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l H3BO3 9.8912e-05 g/l Nicotinic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 67745 | positive | growth | 45 | thermophilic | |
| 69480 | thermophilic | 99.574 |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 100
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.978
Isolation, sampling and environmental information
isolation
- @ref: 67745
- sample type: deep-sea hydrothermal vent chimney
- geographic location: Izu-Bonin Arc, Suiyo Seamount
- country: Japan
- origin.country: JPN
- continent: Asia
- latitude: 28.3424
- longitude: 140.387
Sequence information
Genome sequences
- @ref: 66792
- description: Tepiditoga spiralis sy52
- accession: GCA_014701195
- assembly level: complete
- database: ncbi
- NCBI tax ID: 2108365
GC content
- @ref: 67745
- GC-content: 25.8
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 87 | no |
| flagellated | no | 89.149 | no |
| gram-positive | no | 93.971 | no |
| anaerobic | yes | 100 | no |
| aerobic | no | 99.074 | no |
| halophile | no | 93.844 | no |
| spore-forming | no | 88.255 | no |
| glucose-util | yes | 87.506 | no |
| thermophile | yes | 100 | yes |
| motile | yes | 83.524 | no |
| glucose-ferment | yes | 55.237 | no |
External links
@ref: 67745
culture collection no.: DSM 105848, NBRC 112788
straininfo link
- @ref: 113018
- straininfo: 401099
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67745 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105848 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105848) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 113018 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401099.1 |