Strain identifier
BacDive ID: 160724
Type strain: 
Species: Paenibacillus swuensis
Strain history: M. K. Kim DY6.
NCBI tax ID(s): 1178515 (species)
version 9 (current version)
General
@ref: 67637
BacDive-ID: 160724
DSM-Number: 112724
keywords: genome sequence, 16S sequence, Bacteria
description: Paenibacillus swuensis DSM 112724 is a bacterium that was isolated from soil sample.
NCBI tax id
- NCBI tax id: 1178515
- Matching level: species
strain history
| @ref | history |
|---|---|
| 67637 | <- KRIBB - Korea Res. Inst. Biosci. Biotechn.; KCTC 33026 |
| 67770 | M. K. Kim DY6. |
doi: 10.13145/bacdive160724.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus swuensis
- full scientific name: Paenibacillus swuensis Lee et al. 2015
@ref: 67637
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus swuensis
full scientific name: Paenibacillus swuensis Lee et al. 2015
type strain: yes
Culture and growth conditions
culture medium
- @ref: 67637
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 67637 | positive | growth | 30 |
| 67770 | positive | growth | 30 |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 67637 | soil sample | Jeonbuk | Republic of Korea | KOR | Asia |
| 67770 | Soil sample collected from Mt. Deogyusan | Jeonbuk Province | Republic of Korea | KOR | Asia |
taxonmaps
- @ref: 69479
- File name: preview.99_4009.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_2038;97_2456;98_3038;99_4009&stattab=map
- Last taxonomy: Paenibacillus swuensis subclade
- 16S sequence: JQ958374
- Sequence Identity:
- Total samples: 407
- soil counts: 165
- aquatic counts: 27
- animal counts: 167
- plant counts: 48
Safety information
risk assessment
- @ref: 67637
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67770
- description: Paenibacillus swuensis strain DY6 16S ribosomal RNA gene, partial sequence
- accession: JQ958374
- length: 1492
- database: nuccore
- NCBI tax ID: 1178515
Genome sequences
- @ref: 67770
- description: Paenibacillus swuensis DY6
- accession: GCA_001644605
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1178515
GC content
- @ref: 67770
- GC-content: 47.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67637
culture collection no.: DSM 112724, KCTC 33026, JCM 18491
straininfo link
- @ref: 112950
- straininfo: 400252
literature
- topic: Phylogeny
- Pubmed-ID: 24500474
- title: Paenibacillus swuensis sp. nov., a bacterium isolated from soil.
- authors: Lee JJ, Yang DH, Ko YS, Park JK, Im EY, Kim JY, Kwon KY, Lee YJ, Kim HM, Kim MK
- journal: J Microbiol
- DOI: 10.1007/s12275-014-3546-x
- year: 2014
- mesh: DNA, Bacterial, Lipids/chemistry, Paenibacillus/chemistry/*classification/*genetics/isolation & purification, Phenotype, Phylogeny, RNA, Ribosomal, 16S, Republic of Korea, *Soil Microbiology
- topic2: Phenotype
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 67637 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-112724 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 112724) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 112950 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400252.1 |