Strain identifier

BacDive ID: 16068

Type strain: No

Species: Streptomyces venezuelae

Strain Designation: 8-44, FD 16317

Strain history: <- J.B. Routien, Chas. Pfizer & Co., FD 16317 <- ATCC <- D. Gottlieb, 8-44

NCBI tax ID(s): 54571 (species)

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General

@ref: 9586

BacDive-ID: 16068

DSM-Number: 40634

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces venezuelae 8-44 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from compost soil.

NCBI tax id

  • NCBI tax id: 54571
  • Matching level: species

strain history

  • @ref: 9586
  • history: <- J.B. Routien, Chas. Pfizer & Co., FD 16317 <- ATCC <- D. Gottlieb, 8-44

doi: 10.13145/bacdive16068.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces venezuelae
  • full scientific name: Streptomyces venezuelae Ehrlich et al. 1948 (Approved Lists 1980)

@ref: 9586

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces venezuelae

full scientific name: Streptomyces venezuelae Ehrlich et al. 1948 emend. Nouioui et al. 2018

strain designation: 8-44, FD 16317

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.986
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9586GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9586ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

  • @ref: 9586
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

  • @ref: 9586
  • compound: chloramphenicol

Isolation, sampling and environmental information

isolation

  • @ref: 9586
  • sample type: compost soil

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation#Composting
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 9586
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: S.venezuelae 16S rRNA and 23S rRNA genes
  • accession: X86939
  • length: 466
  • database: ena
  • NCBI tax ID: 1936

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces venezuelae strain ATCC 1059554571.49completepatric54571
66792Streptomyces venezuelae ATCC 10595GCA_008705255completencbi54571

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.168no
gram-positiveyes87.991no
anaerobicno99.399no
aerobicyes93.683no
halophileno94.982no
spore-formingyes93.325no
thermophileno98.666yes
glucose-utilyes90.545no
motileno93.547no
glucose-fermentno85.677no

External links

@ref: 9586

culture collection no.: DSM 40634, ATCC 10595, CBS 369.49, ETH 10210, IPV 877, NCIB 8231, NRRL B-902, RIA 130, RIA 741

straininfo link

  • @ref: 85139
  • straininfo: 45492

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny8631730Characterization of Streptomyces venezuelae ATCC 10595 rRNA gene clusters and cloning of rrnA.La Farina M, Stira S, Mancuso R, Grisanti CJ Bacteriol10.1128/jb.178.5.1480-1483.19961996Cloning, Molecular, DNA, Ribosomal/*genetics, *Genes, Bacterial, Molecular Sequence Data, *Multigene Family, Nucleic Acid Hybridization, RNA Probes, RNA, Ribosomal/*genetics, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, RNA, Ribosomal, 5S/genetics, Species Specificity, Streptomyces/*geneticsEnzymology
Enzymology23497129Streptomyces spp. as efficient expression system for a D,D-peptidase/D,D-carboxypeptidase involved in glycopeptide antibiotic resistance.Binda E, Marcone GL, Berini F, Pollegioni L, Marinelli FBMC Biotechnol10.1186/1472-6750-13-242013Actinomycetales/enzymology, Anti-Bacterial Agents/pharmacology, Bacterial Proteins/genetics/*metabolism, Biomass, Carboxypeptidases/genetics/*metabolism, Cloning, Molecular, Drug Resistance, Bacterial/drug effects, Glycopeptides/pharmacology, Recombinant Proteins/biosynthesis/genetics, Streptomyces/*metabolism, Substrate SpecificityMetabolism
Genetics32516997Comparative Genomics Determines Strain-Dependent Secondary Metabolite Production in Streptomyces venezuelae Strains.Kim W, Lee N, Hwang S, Lee Y, Kim J, Cho S, Palsson B, Cho BKBiomolecules10.3390/biom100608642020Chloramphenicol/*biosynthesis/chemistry/metabolism, *Genomics, Isoquinolines/chemistry/*metabolism, Molecular Structure, Streptomyces/chemistry/*classification/genetics/*metabolismMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9586Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40634)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40634
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85139Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45492.1StrainInfo: A central database for resolving microbial strain identifiers