Strain identifier

BacDive ID: 160645

Type strain: No

Species: Ligilactobacillus salivarius

Strain Designation: Cla-CZ-11

Strain history: <- T. Clavel, RWTH Aachen; Cla-CZ-11 <- C. Zenner, LMU, München;

NCBI tax ID(s): 1624 (species)

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General

@ref: 67554

BacDive-ID: 160645

DSM-Number: 108969

keywords: genome sequence, 16S sequence, Bacteria, Gram-positive

description: Ligilactobacillus salivarius Cla-CZ-11 is a Gram-positive bacterium that was isolated from chicken caecal content, 21 days old.

NCBI tax id

  • NCBI tax id: 1624
  • Matching level: species

strain history

  • @ref: 67554
  • history: <- T. Clavel, RWTH Aachen; Cla-CZ-11 <- C. Zenner, LMU, München;

doi: 10.13145/bacdive160645.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Ligilactobacillus
  • species: Ligilactobacillus salivarius
  • full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020

  • synonyms

    @refsynonym
    20215Lactobacillus salivarius subsp. salicinius
    20215Lactobacillus salivarius

@ref: 67554

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Ligilactobacillus

species: Ligilactobacillus salivarius

full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020

strain designation: Cla-CZ-11

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 92.011

Culture and growth conditions

culture medium

  • @ref: 67554
  • name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/339
  • composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 67554
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose+fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
67554--++------++-----+--++-++++-+

Isolation, sampling and environmental information

isolation

  • @ref: 67554
  • sample type: chicken caecal content, 21 days old
  • geographic location: Munich
  • country: Germany
  • origin.country: DEU
  • continent: Europe
  • latitude: 48.1502
  • longitude: 11.5856

Safety information

risk assessment

  • @ref: 67554
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 67554
  • description: Ligilactobacillus salivarius strain ClaCZ11 16S ribosomal RNA gene, partial sequence
  • accession: MN055930.1
  • length: 1499
  • database: nuccore
  • NCBI tax ID: 1624

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Ligilactobacillus salivarius DSM 108969GCA_014982915contigncbi1624
66792Ligilactobacillus salivarius strain DSM 1089691624.586wgspatric1624

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes92.011no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no80.47no
69480spore-formingspore-formingAbility to form endo- or exosporesno87.814no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no94.882no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno95.028yes
69480flagellatedmotile2+Ability to perform flagellated movementno89no

External links

@ref: 67554

culture collection no.: DSM 108969

straininfo link

  • @ref: 112881
  • straininfo: 401013

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67554Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108969Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108969)
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
112881Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401013.1