Strain identifier
BacDive ID: 160634
Type strain: 
Species: Ligilactobacillus aviarius
Strain Designation: Cla-CZ-67
Strain history: <- T. Clavel, RWTH Aachen; Cla-CZ-67 <- C. Zenner, LMU, München;
NCBI tax ID(s): 1606 (species)
version 9 (current version)
General
@ref: 67543
BacDive-ID: 160634
DSM-Number: 109115
keywords: 16S sequence, Bacteria
description: Ligilactobacillus aviarius Cla-CZ-67 is a bacterium that was isolated from chicken jejunal content, adult.
NCBI tax id
- NCBI tax id: 1606
- Matching level: species
strain history
- @ref: 67543
- history: <- T. Clavel, RWTH Aachen; Cla-CZ-67 <- C. Zenner, LMU, München;
doi: 10.13145/bacdive160634.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus aviarius
- full scientific name: Ligilactobacillus aviarius (Fujisawa et al. 1985) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus aviarius
@ref: 67543
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus aviarius
full scientific name: Ligilactobacillus aviarius (Fujisawa et al. 1985) Zheng et al. 2020
strain designation: Cla-CZ-67
type strain: no
Culture and growth conditions
culture medium
- @ref: 67543
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 67543
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68380 | 16199 | urea | - | hydrolysis |
| 68380 | 29016 | arginine | - | hydrolysis |
| 68380 | 16024 | D-mannose | + | fermentation |
| 68380 | 16634 | raffinose | + | fermentation |
| 68380 | 29985 | L-glutamate | - | degradation |
| 68380 | 17632 | nitrate | - | reduction |
| 68380 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68380 | serine arylamidase | + | |
| 68380 | glutamyl-glutamate arylamidase | - | |
| 68380 | histidine arylamidase | + | |
| 68380 | glycin arylamidase | + | |
| 68380 | alanine arylamidase | + | 3.4.11.2 |
| 68380 | tyrosine arylamidase | + | |
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68380 | leucine arylamidase | + | 3.4.11.1 |
| 68380 | phenylalanine arylamidase | + | |
| 68380 | proline-arylamidase | + | 3.4.11.5 |
| 68380 | L-arginine arylamidase | + | |
| 68380 | alkaline phosphatase | - | 3.1.3.1 |
| 68380 | tryptophan deaminase | - | 4.1.99.1 |
| 68380 | alpha-fucosidase | - | 3.2.1.51 |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 |
| 68380 | beta-glucuronidase | - | 3.2.1.31 |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 |
| 68380 | alpha-glucosidase | - | 3.2.1.20 |
| 68380 | beta-Galactosidase 6-phosphate | - | |
| 68380 | beta-galactosidase | + | 3.2.1.23 |
| 68380 | alpha-galactosidase | + | 3.2.1.22 |
| 68380 | arginine dihydrolase | - | 3.5.3.6 |
| 68380 | urease | - | 3.5.1.5 |
API rID32A
| @ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67543 | - | - | + | + | - | - | +/- | - | - | +/- | + | + | - | - | - | - | - | + | + | +/- | + | + | - | + | + | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 67543
- sample type: chicken jejunal content, adult
- geographic location: Dietramszell (Bavaria)
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 47.8589
- longitude: 11.5894
Safety information
risk assessment
- @ref: 67543
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67543
- description: Ligilactobacillus aviarius strain ClaCZ67 16S ribosomal RNA gene, partial sequence
- accession: MN055939.1
- length: 1498
- database: nuccore
- NCBI tax ID: 1606
External links
@ref: 67543
culture collection no.: DSM 109115
straininfo link
- @ref: 112872
- straininfo: 401908
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 67543 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-109115 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 109115) | |
| 68380 | Automatically annotated from API rID32A | |||
| 112872 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401908.1 |