Strain identifier

BacDive ID: 160623

Type strain: Yes

Species: Gallalistipes aquisgranensis

Strain Designation: Cla-CZ-119

Strain history: <- T. Clavel; RWTH Aachen, Germany; Cla-CZ-119

NCBI tax ID(s): 2779358 (species)

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General

@ref: 67531

BacDive-ID: 160623

DSM-Number: 108975

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative

description: Gallalistipes aquisgranensis Cla-CZ-119 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from chicken cecal content.

NCBI tax id

  • NCBI tax id: 2779358
  • Matching level: species

strain history

  • @ref: 67531
  • history: <- T. Clavel; RWTH Aachen, Germany; Cla-CZ-119

doi: 10.13145/bacdive160623.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Rikenellaceae
  • genus: Gallalistipes
  • species: Gallalistipes aquisgranensis
  • full scientific name: Gallalistipes aquisgranensis Zenner et al. 2021

@ref: 67531

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Rikenellaceae

genus: Gallalistipes

species: Gallalistipes aquisgranensis

full scientific name: Gallalistipes aquisgranensis

strain designation: Cla-CZ-119

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.996

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
67531CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
67531GAM Broth, modified (Gifu Anaerobic Medium Broth, modified) (DSMZ Medium 1715)yeshttps://mediadive.dsmz.de/medium/1715Name: GAM Broth, mod. (Gifu Anaerobic Medium Broth, modified) (DSMZ Medium 1715) Composition: GAM Broth mod. powder 41.7 g/l Distilled water
67531COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 67531
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 98.65

spore formation

@refspore formationconfidence
69480no99.996
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose-builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose-builds acid from
683676731melezitose-builds acid from
6836716024D-mannose-builds acid from
6836717057cellobiose-builds acid from
6836717754glycerol-builds acid from
683674853esculin+hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose-builds acid from
6836765327D-xylose-builds acid from
6836717814salicin-builds acid from
6836717306maltose-builds acid from
6836717992sucrose-builds acid from
6836717716lactose-builds acid from
6836716899D-mannitol-builds acid from
6836717634D-glucose-builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6836735581indoleno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole-
6836735581indole-

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68367catalase-1.11.1.6
68367beta-glucosidase+3.2.1.21
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRECAT
67531-----------+---------

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
67531--------+/--------+--+----+----

Isolation, sampling and environmental information

isolation

  • @ref: 67531
  • sample type: chicken cecal content
  • geographic location: Munich
  • country: Germany
  • origin.country: DEU
  • continent: Europe
  • latitude: 48.1502
  • longitude: 11.5857

Sequence information

16S sequences

  • @ref: 67531
  • description: Rikenellaceae bacterium strain ClaCZ119 16S ribosomal RNA gene, partial sequence
  • accession: MN055950.1
  • length: 1428
  • database: ena
  • NCBI tax ID: 2779358

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Gallalistipes aquisgranensis DSM 108975GCA_014982715contigncbi2779358
66792Rikenellaceae bacterium DSM 1089752779358.3wgspatric2779358
66792Rikenellaceae bacterium DSM 1089752909468776draftimg2779358

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.535no
gram-positiveno98.276no
anaerobicyes97.185no
halophileno91.785no
spore-formingno97.3no
glucose-utilyes85.592no
flagellatedno97.655no
aerobicno93.839no
thermophileno95.625no
glucose-fermentyes53.803no

External links

@ref: 67531

culture collection no.: DSM 108975

straininfo link

  • @ref: 112861
  • straininfo: 400625

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67531Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108975Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108975)
68367Automatically annotated from API 20A
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
112861Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400625.1