Strain identifier
BacDive ID: 160614
Type strain: 
Species: Sodaliphilus pleomorphus
Strain Designation: Oil+RF-744-WCA-WT10, Oil-RF-744-WCA-WT-10
Strain history: B. Abt; DSMZ, Germany; DSM 108610 (=Oil-RF-744-WCA-WT-10) <-- T. Clavel; RWTH Aachen, Germany.
NCBI tax ID(s): 2606626 (species)
version 8.1 (current version)
General
@ref: 67522
BacDive-ID: 160614
DSM-Number: 108610
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, other
description: Sodaliphilus pleomorphus Oil+RF-744-WCA-WT10 is an anaerobe, mesophilic, other bacterium that was isolated from Aachener Minipig, WT, 4 months old, feces.
NCBI tax id
- NCBI tax id: 2606626
- Matching level: species
strain history
| @ref | history |
|---|---|
| 67522 | <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; Oil+RF-744-WCA-WT10 |
| 67770 | B. Abt; DSMZ, Germany; DSM 108610 (=Oil-RF-744-WCA-WT-10) <-- T. Clavel; RWTH Aachen, Germany. |
doi: 10.13145/bacdive160614.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Muribaculaceae
- genus: Sodaliphilus
- species: Sodaliphilus pleomorphus
- full scientific name: Sodaliphilus pleomorphus Wylensek et al. 2021
@ref: 67522
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Muribaculaceae
genus: Sodaliphilus
species: Sodaliphilus pleomorphus
full scientific name: Sodaliphilus pleomorphus
strain designation: Oil+RF-744-WCA-WT10, Oil-RF-744-WCA-WT-10
type strain: yes
Morphology
cell morphology
- @ref: 69645
- cell length: 50 µm
- cell shape: other
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 67522 | WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) | yes | https://mediadive.dsmz.de/medium/339 | Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339; with strain-specific modifications) Composition: Sheep blood 70.0 g/l dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water |
| 69645 | Wilkins-Chalgren Anaerobe broth | yes | supplemented with sheep blood (5%) | |
| 69645 | Wilkins-Chalgren Anaerobe broth | no | ||
| 69645 | modified YCFA | yes |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 67522 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
| 69645 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 69645
- oxygen tolerance: anaerobe
observation
| @ref | observation |
|---|---|
| 69645 | Growth is enhanced when co-incubated on plate with other isolates, including Tissierella pigra, Hornefia butyriciproducens and Anaerobutyricum soehngenii |
| 69645 | Weak hemolytic activity |
| 69645 | Longer incubation times result in shortening and thickening of cells |
metabolite production
| @ref | Chebi-ID | metabolite | production |
|---|---|---|---|
| 69645 | 15740 | formate | yes |
| 69645 | 48944 | isobutyrate | yes |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | enrichment culture | enrichment culture duration | enrichment culture temperature | isolation procedure |
|---|---|---|---|---|---|---|---|---|---|
| 67522 | Aachener Minipig, WT, 4 months old, feces | Aachen | Germany | DEU | Europe | ||||
| 67770 | Feces of an Aachen minipig in Germany | ||||||||
| 69645 | Pig feces | Aachen, NRW | Germany | DEU | Europe | Oil-RF-PBS broth | 7-30 days | 37 | anaerobic |
Sequence information
16S sequences
- @ref: 67522
- description: Muribaculaceae bacterium DSM 108610 16S ribosomal RNA gene, partial sequence
- accession: MN537547
- length: 1459
- database: ena
- NCBI tax ID: 2606626
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacteroidales bacterium Oil-RF-744-WCA-WT-10 | 2606626.3 | wgs | patric | 2606626 |
| 66792 | Muribaculaceae bacterium DSM 108610 strain Oil-RF-744-WCA-WT-10 | 2652307.3 | complete | patric | 2606626 |
| 69645 | Sodaliphilus pleomorphus Oil-RF-744-WCA-WT-10 | GCA_009676955 | complete | ncbi | 2606626 |
| 69645 | Whole genome shotgun | CP045696 | ncbi | 2606626 |
GC content
- @ref: 67770
- GC-content: 54.4
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 92.047 | no |
| gram-positive | no | 97.05 | no |
| anaerobic | yes | 98.732 | no |
| aerobic | no | 98.244 | no |
| halophile | no | 87.891 | no |
| spore-forming | no | 95.163 | no |
| glucose-util | yes | 85.91 | no |
| thermophile | no | 92.736 | yes |
| flagellated | no | 96.913 | no |
| glucose-ferment | yes | 60.772 | no |
External links
@ref: 67522
culture collection no.: DSM 108610, JCM 34423
straininfo link
- @ref: 112852
- straininfo: 402407
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67522 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-108610 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108610) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69645 | David Wylensek, Thomas C. A. Hitch, Thomas Riedel, Afrizal Afrizal, Neeraj Kumar, Esther Wortmann, Tianzhe Liu, Saravanan Devendran, Till R. Lesker, Sara B. Hernández, Viktoria Heine, Eva M. Buhl, Paul M. D'Agostino, Fabio Cumbo, Thomas Fischöder, Marzena Wyschkon, Torey Looft, Valeria R. Parreira, Birte Abt, Heidi L. Doden, Lindsey Ly, João M. P. Alves, Markus Reichlin, Krzysztof Flisikowski, Laura Navarro Suarez, Anthony P. Neumann, Garret Suen, Tomas de Wouters, Sascha Rohn, Ilias Lagkouvardos, Emma Allen-Vercoe, Cathrin Spröer, Boyke Bunk, Anja J. Taverne-Thiele, Marcel Giesbers, Jerry M. Wells, Klaus Neuhaus, Angelika Schnieke, Felipe Cava, Nicola Segata, Lothar Elling, Till Strowig, Jason M. Ridlon, Tobias A. M. Gulder, Jörg Overmann, Thomas Clavel | A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity | 10.1038/s41467-020-19929-w | |
| 112852 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402407.1 |