Strain identifier
BacDive ID: 16060
Type strain: 
Species: Streptomyces tubercidicus
Strain Designation: 5US2
Strain history: <- D. L. Crawford, Univ. Idaho, Environm. Biotechnol. Inst., Moscow, USA; 5US2 <- M. J. Kang
NCBI tax ID(s): 47759 (species)
General
@ref: 16290
BacDive-ID: 16060
DSM-Number: 41959
keywords: 16S sequence, Bacteria
description: Streptomyces tubercidicus 5US2 is a bacterium that was isolated from sugar beet field soil.
NCBI tax id
- NCBI tax id: 47759
- Matching level: species
strain history
- @ref: 16290
- history: <- D. L. Crawford, Univ. Idaho, Environm. Biotechnol. Inst., Moscow, USA; 5US2 <- M. J. Kang
doi: 10.13145/bacdive16060.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces tubercidicus
- full scientific name: Streptomyces tubercidicus Nakamura 1961 (Approved Lists 1980)
@ref: 16290
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces tubercidicus
full scientific name: Streptomyces tubercidicus Nakamura 1961
strain designation: 5US2
type strain: no
Culture and growth conditions
culture medium
- @ref: 16290
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 16290
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 16290
- sample type: sugar beet field soil
- geographic location: Idaho, Twin Falls
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Safety information
risk assessment
- @ref: 16290
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16290
- description: Streptomyces tubercidicus strain 5US-2 16S ribosomal RNA gene, partial sequence
- accession: FJ170074
- length: 1539
- database: nuccore
- NCBI tax ID: 47759
External links
@ref: 16290
culture collection no.: DSM 41959
straininfo link
- @ref: 85133
- straininfo: 400167
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16290 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41959) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41959 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 85133 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400167.1 | StrainInfo: A central database for resolving microbial strain identifiers |