Strain identifier
BacDive ID: 160586
Type strain: 
Species: Virgibacillus sp.
Strain Designation: SKW19
Strain history: <- S. Rodtong, Suranaree University of Technology; SKW19 <- S. Rodtong and J. Yongsawatdigul
NCBI tax ID(s): 1872700 (species)
General
@ref: 67494
BacDive-ID: 160586
DSM-Number: 24891
keywords: 16S sequence, Bacteria, mesophilic
description: Virgibacillus sp. SKW19 is a mesophilic bacterium that was isolated from Thai fish sauce fermentation.
NCBI tax id
- NCBI tax id: 1872700
- Matching level: species
strain history
- @ref: 67494
- history: <- S. Rodtong, Suranaree University of Technology; SKW19 <- S. Rodtong and J. Yongsawatdigul
doi: 10.13145/bacdive160586.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Virgibacillus
- species: Virgibacillus sp.
- full scientific name: Virgibacillus Heyndrickx et al. 1998
synonyms
- @ref: 20215
- synonym: Salibacillus
@ref: 67494
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Virgibacillus
species: Virgibacillus sp.
full scientific name: Virgibacillus sp.
strain designation: SKW19
type strain: no
Culture and growth conditions
culture medium
- @ref: 67494
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: NaCl 50.0 g/l Agar 15.0 g/l Casein peptone 15.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 67494
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67494
- sample type: Thai fish sauce fermentation
- geographic location: East
- country: Thailand
- origin.country: THA
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_3814.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1959;97_2355;98_2906;99_3814&stattab=map
- Last taxonomy: Virgibacillus halodenitrificans subclade
- 16S sequence: DQ910855
- Sequence Identity:
- Total samples: 5050
- soil counts: 2809
- aquatic counts: 693
- animal counts: 1180
- plant counts: 368
Sequence information
16S sequences
- @ref: 67494
- description: Virgibacillus sp. SKW19 16S ribosomal RNA gene, partial sequence
- accession: DQ910855
- length: 1530
- database: ena
- NCBI tax ID: 403960
External links
@ref: 67494
culture collection no.: DSM 24891
straininfo link
- @ref: 112825
- straininfo: 400398
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 67494 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24891 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24891) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 112825 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400398.1 |