Strain identifier

BacDive ID: 160568

Type strain: No

Species: Rhodococcus daqingensis

Strain Designation: Z1

Strain history: <- L. Zhang, Heilongjiang Academy of Agicultural Scienes; Z1 <- L. Zhang, Heilongjiang Academy of Agicultural Scienes; Z1

NCBI tax ID(s): 2479363 (species)

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General

@ref: 67476

BacDive-ID: 160568

DSM-Number: 107227

description: Rhodococcus daqingensis Z1 is a prokaryote that was isolated from soil.

NCBI tax id

  • NCBI tax id: 2479363
  • Matching level: species

strain history

  • @ref: 67476
  • history: <- L. Zhang, Heilongjiang Academy of Agicultural Scienes; Z1 <- L. Zhang, Heilongjiang Academy of Agicultural Scienes; Z1

doi: 10.13145/bacdive160568.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • genus: Rhodococcus
  • species: Rhodococcus daqingensis
  • full scientific name: Rhodococcus daqingensis Wang et al. 2019

@ref: 67476

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus daqingensis

full scientific name: Rhodococcus daqingensis Wang et al. 2019

strain designation: Z1

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
67476GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
67476TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
67476ISP2 MEDIUM (DSMZ Medium 987)yeshttps://mediadive.dsmz.de/medium/987Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

  • @ref: 67476
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYG
67476+--+----+-----------

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
67476-----++/----+---------

Isolation, sampling and environmental information

isolation

  • @ref: 67476
  • sample type: soil
  • geographic location: Heilongjiang Province, Daqing (46° 28' 51'' N, 125° 09' 54'' E)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 46.4808
  • longitude: 125.165

External links

@ref: 67476

culture collection no.: DSM 107227, CGMCC 1.13630

literature

  • topic: Phylogeny
  • Pubmed-ID: 30467662
  • title: Rhodococcus daqingensis sp. nov., isolated from petroleum-contaminated soil.
  • authors: Wang L, Zhang L, Zhang X, Zhang S, Yang L, Yuan H, Chen J, Liang C, Huang W, Liu J, Zhao Y, Yang Q
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-018-1201-y
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Petroleum/*analysis/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodococcus/classification/genetics/*isolation & purification/metabolism, Soil/chemistry, *Soil Microbiology
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67476Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107227Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107227)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym