Strain identifier

BacDive ID: 160556

Type strain: No

Species: Palleniella intestinalis

Strain Designation: Nlrp6High, PINT

Strain history: <- T. Strowig, HZI, Braunschweig, Germany; <- A. Iljazovic, HZI, Braunschweig, Germany;

NCBI tax ID(s): 2734633 (species)

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General

@ref: 67464

BacDive-ID: 160556

DSM-Number: 103738

keywords: genome sequence, Bacteria, anaerobe, mesophilic, Gram-negative

description: Palleniella intestinalis Nlrp6High is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from Colon fecal content from Nlrp6-/- mice.

NCBI tax id

  • NCBI tax id: 2734633
  • Matching level: species

strain history

  • @ref: 67464
  • history: <- T. Strowig, HZI, Braunschweig, Germany; <- A. Iljazovic, HZI, Braunschweig, Germany;

doi: 10.13145/bacdive160556.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Prevotellaceae
  • genus: Palleniella
  • species: Palleniella intestinalis
  • full scientific name: Palleniella intestinalis Hitch et al. 2023

@ref: 67464

domain: Bacteria

phylum: Bacteroidota

class: Bacteroidia

order: Bacteroidales

family: Prevotellaceae

genus: Palleniella

species: Palleniella intestinalis

full scientific name: Palleniella intestinalis

strain designation: Nlrp6High, PINT

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.996

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
67464COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
67464CHOPPED MEAT MEDIUM (DSMZ Medium 78)yeshttps://mediadive.dsmz.de/medium/78Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

culture temp

  • @ref: 67464
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 99.65

spore formation

@refspore formationconfidence
69480no99.998
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase+
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase+3.2.1.55
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
67464---+-+-+-----------+----+--+-
67464--++-+++------+/--+--+----+--+-

Isolation, sampling and environmental information

isolation

  • @ref: 67464
  • sample type: Colon fecal content from Nlrp6-/- mice
  • country: Germany
  • origin.country: DEU
  • continent: Europe

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Palleniella intestinalis PINTGCA_013166595contigncbi2736291
66792Prevotella sp. PINT2736291.3wgspatric2736291
66792Prevotella sp. PINT2921969536draftimg2736291

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno92.67no
gram-positiveno98.041no
anaerobicyes99.005no
halophileno89.865no
spore-formingno96.633no
glucose-utilyes86.629no
flagellatedno96.857no
aerobicno98.323no
thermophileno97.932yes
glucose-fermentyes64.564no

External links

@ref: 67464

culture collection no.: DSM 103738

straininfo link

  • @ref: 112797
  • straininfo: 399379

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67464Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103738Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103738)
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
112797Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399379.1