Strain identifier
BacDive ID: 160423
Type strain: 
Species: Alkalibacillus aidingensis
Strain history: <- S.-K. Tang, Univ. Yunnan, YIM; YIM 98829
NCBI tax ID(s): 2747607 (species)
version 9.1 (current version)
General
@ref: 67331
BacDive-ID: 160423
DSM-Number: 112470
keywords: genome sequence, Bacteria, spore-forming, motile
description: Alkalibacillus aidingensis DSM 112470 is a spore-forming, motile bacterium that was isolated from Sediment soil.
NCBI tax id
- NCBI tax id: 2747607
- Matching level: species
strain history
- @ref: 67331
- history: <- S.-K. Tang, Univ. Yunnan, YIM; YIM 98829
doi: 10.13145/bacdive160423.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Alkalibacillus
- species: Alkalibacillus aidingensis
- full scientific name: Alkalibacillus aidingensis Li et al. 2022
@ref: 67331
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Alkalibacillus
species: Alkalibacillus aidingensis
full scientific name: Alkalibacillus aidingensis Li et al. 2022
type strain: yes
Culture and growth conditions
culture medium
- @ref: 67331
- name: MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514b
- composition: Name: MEDIUM 514 plus additional salt (DSMZ Medium 514b) Composition: NaCl 19.45 g/l Agar 17.5 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 67331
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 97
Isolation, sampling and environmental information
isolation
- @ref: 67331
- sample type: Sediment soil
- geographic location: Turpan city, Xinjiang Province
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 42.7032
- longitude: 89.3306
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Alkalibacillus aidingensis YIM 98829 | GCA_014595945 | scaffold | ncbi | 2747607 |
| 66792 | Alkalibacillus sp. YIM 98829 | 2747607.3 | wgs | patric | 2747607 |
| 66792 | Alkalibacillus sp. YIM 98829 | 2920184046 | draft | img | 2747607 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 97 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 79.294 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.641 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 81.979 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 81.268 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 88.663 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 81.151 | no |
External links
@ref: 67331
culture collection no.: DSM 112470, YIM 98829
straininfo link
- @ref: 112670
- straininfo: 401307
literature
- topic: Phylogeny
- Pubmed-ID: 34181048
- title: Alkalibacillus aidingensis sp. nov., an Bacterium Isolated from Aiding Lake in Xinjiang Province, North-West China.
- authors: Li R, Yang L, Pukall R, Neumann-Schaal M, Mu CG, Shi YJ, Wang Y, Jiang GQ, Zhou YG, Cai M, Yin M, Zhu WY, Tang SK
- journal: Curr Microbiol
- DOI: 10.1007/s00284-021-02587-6
- year: 2021
- mesh: Bacterial Typing Techniques, China, DNA, Bacterial/genetics, *Fatty Acids/analysis, *Lakes, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67331 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-112470 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 112470) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 112670 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401307.1 |