Strain identifier

BacDive ID: 160413

Type strain: Yes

Species: Lactococcus hodotermopsidis

Strain Designation: Hs30E4-3

Strain history: S. Noda; Univ. of Yamanashi, Japan; Hs30E4-3.

NCBI tax ID(s): 2709157 (species)

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General

@ref: 67319

BacDive-ID: 160413

DSM-Number: 110148

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Lactococcus hodotermopsidis Hs30E4-3 is a mesophilic bacterium that was isolated from Hodotermopsis sjostedti.

NCBI tax id

  • NCBI tax id: 2709157
  • Matching level: species

strain history

@refhistory
67319<- M. Sakamoto, RIKEN, Wako, Saitama, Japan; JCM 33486 <- M. Noda, University of Yamanashi, Kofu, Japan; JCM 33486
67770S. Noda; Univ. of Yamanashi, Japan; Hs30E4-3.

doi: 10.13145/bacdive160413.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Lactococcus
  • species: Lactococcus hodotermopsidis
  • full scientific name: Lactococcus hodotermopsidis Noda et al. 2020

@ref: 67319

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Lactococcus

species: Lactococcus hodotermopsidis

full scientific name: Lactococcus hodotermopsidis Noda et al. 2020

strain designation: Hs30E4-3

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no97.642
69480100positive

Culture and growth conditions

culture medium

  • @ref: 67319
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
67319positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.998
69481no100

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinenthost species
67319Hodotermopsis sjostedtiAmami Öshima , Kagoshima PrefectureJapanJPNAsia
67770Gut of the wood-feeding lower termite Hodotermopsis sjostedtiHodotermopsis sjostedti

Sequence information

16S sequences

  • @ref: 67770
  • description: Lactococcus hodotermopsidis Hs30E4_3 gene for 16S ribosomal RNA, partial sequence
  • accession: LC523828
  • length: 1472
  • database: ena
  • NCBI tax ID: 2709157

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactococcus sp. Hs30E4-32709157.3wgspatric2709157
66792Lactococcus hodotermopsidis Hs30E4-32906017217draftimg2709157
67770Lactococcus hodotermopsidis Hs30E4-3GCA_011170085contigncbi2709157

GC content

  • @ref: 67770
  • GC-content: 39.3
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno96.107no
gram-positiveyes96.299no
anaerobicno88.832no
halophileyes71.505no
spore-formingno90.237no
glucose-utilyes87.994no
aerobicno97.907no
flagellatedno97.435no
thermophileno97.762yes
glucose-fermentyes89.108no

External links

@ref: 67319

culture collection no.: DSM 110148, JCM 33486

straininfo link

  • @ref: 112661
  • straininfo: 400337

literature

  • topic: Phylogeny
  • Pubmed-ID: 32614762
  • title: Lactococcus insecticola sp. nov. and Lactococcus hodotermopsidis sp. nov., isolated from the gut of the wood-feeding lower termite Hodotermopsis sjostedti.
  • authors: Noda S, Koyama F, Aihara C, Ikeyama N, Yuki M, Ohkuma M, Sakamoto M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004309
  • year: 2020
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gastrointestinal Tract/*microbiology, Genes, Bacterial, Isoptera/*microbiology, Lactococcus/*classification/isolation & purification, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Wood
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67319Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-110148Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110148)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
112661Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400337.1