Strain identifier

BacDive ID: 160339

Type strain: Yes

Species: Corynebacterium yudongzhengii

Strain Designation: 2183

Strain history: <- L. Junqin, Chinese Center for Disease Control and Prevention, Beijing, China; 2183 <- L. Junqin, Chinese Center for Disease Control and Prevention, Beijing, China; 2183

NCBI tax ID(s): 2080740 (species)

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General

@ref: 67245

BacDive-ID: 160339

DSM-Number: 106264

keywords: genome sequence, Bacteria

description: Corynebacterium yudongzhengii 2183 is a bacterium that was isolated from faeces of Tibetan antelope.

NCBI tax id

  • NCBI tax id: 2080740
  • Matching level: species

strain history

  • @ref: 67245
  • history: <- L. Junqin, Chinese Center for Disease Control and Prevention, Beijing, China; 2183 <- L. Junqin, Chinese Center for Disease Control and Prevention, Beijing, China; 2183

doi: 10.13145/bacdive160339.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium yudongzhengii
  • full scientific name: Corynebacterium yudongzhengii Zhu et al. 2020

@ref: 67245

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium yudongzhengii

full scientific name: Corynebacterium yudongzhengii Zhu et al. 2020

strain designation: 2183

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • motility: no
  • confidence: 94

Culture and growth conditions

culture medium

  • @ref: 67245
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 67245
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose+fermentation
6837916988D-ribose+fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYG
67245-+-+--------++------

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
67245---+/-----------------

Isolation, sampling and environmental information

isolation

  • @ref: 67245
  • sample type: faeces of Tibetan antelope
  • geographic location: Qinghai Province, Kekexili (35° 21' 54'' N, 93° 26' 38'' E)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 35.365
  • longitude: 93.4439

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium yudongzhengii 2183GCA_003065405completencbi2080740
66792Corynebacterium yudongzhengii 21832791355251completeimg2080740

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes89.43no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.296no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes64.495no
69480spore-formingspore-formingAbility to form endo- or exosporesno82.271no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno93.149yes
69480flagellatedmotile2+Ability to perform flagellated movementno94no

External links

@ref: 67245

culture collection no.: DSM 106264

straininfo link

  • @ref: 112592
  • straininfo: 408284

literature

  • topic: Phylogeny
  • Pubmed-ID: 32496179
  • title: Actinomyces wuliandei sp. nov., Corynebacterium liangguodongii sp. nov., Corynebacterium yudongzhengii sp. nov. and Oceanobacillus zhaokaii sp. nov., isolated from faeces of Tibetan antelope in the Qinghai-Tibet plateau of China.
  • authors: Zhu W, Li J, Wang X, Yang J, Lu S, Lai XH, Jin D, Huang Y, Zhang S, Pu J, Zhou J, Ren Z, Huang Y, Wu X, Xu J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004232
  • year: 2020
  • mesh: Actinomyces/*classification/isolation & purification, Animals, Antelopes/*microbiology, Bacillaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, Corynebacterium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tibet
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67245Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-106264Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106264)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
112592Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID408284.1