Strain identifier

BacDive ID: 16020

Type strain: Yes

Species: Streptomyces oceani

Strain history: <- X.-P. Tian, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China; SCSIO 02100

NCBI tax ID(s): 1931 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 17830

BacDive-ID: 16020

DSM-Number: 42043

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces oceani DSM 42043 is a mesophilic bacterium that was isolated from marine sediment sample.

NCBI tax id

  • NCBI tax id: 1931
  • Matching level: species

strain history

  • @ref: 17830
  • history: <- X.-P. Tian, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China; SCSIO 02100

doi: 10.13145/bacdive16020.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces oceani
  • full scientific name: Streptomyces oceani Tian et al. 2012

@ref: 17830

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces sp.

full scientific name: Streptomyces sp.

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69331Beige (1001)suter with tyrosine
69331Ivory (1014)ISP 7
69331Ivory (1014)suter without tyrosine
69331Ivory (1014), beige red (3012)ISP 4
69331Ivory (1014), light ivory (1015)ISP 6
69331Light ivory (1015)ISP 2
69331Light ivory 81015)ISP 5
69331Oyster white (1013)ISP 3

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69331noAerial myceliumISP 2
69331noAerial myceliumISP 3
69331noAerial myceliumISP 4
69331noAerial myceliumISP 5
69331noAerial myceliumISP 6
69331noAerial myceliumISP 7
69331noAerial myceliumsuter with tyrosine
69331noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
69331noMelanin
69331yessoluble pigmentSand yellow (1002)

multimedia

@refmultimedia contentcaptionintellectual property rights
69331DSM_42043_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69331DSM_42043_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69331DSM_42043_image5.jpeg(ISP6, ISP7, SSM+T, SSM-T)Helmholtz-Zentrum für Infektionsforschung GmbH
69331DSM_42043_image6.jpeg(ISP6, ISP7, SSM+T, SSM-T)Helmholtz-Zentrum für Infektionsforschung GmbH
69331DSM_42043_image7.jpeg(ISP6, ISP7, SSM+T, SSM-T)Helmholtz-Zentrum für Infektionsforschung GmbH
69331DSM_42043_image8.jpeg(ISP6, ISP7, SSM+T, SSM-T)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17830BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
17830ISP2 MEDIUM (DSMZ Medium 987)yeshttps://mediadive.dsmz.de/medium/987Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

  • @ref: 17830
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

halophily

  • @ref: 69331
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-7.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6933122599arabinose-growth
6933162968cellulose-growth
6933128757fructose+/-growth
6933117234glucose+growth
6933117268inositol+/-growth
6933137684mannose+/-growth
6933116634raffinose-growth
6933126546rhamnose-growth
6933117992sucrose-growth
6933118222xylose+growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69331---+---+--+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69331++/-+/--++/---+/-+++/-+-++++/--

Isolation, sampling and environmental information

isolation

  • @ref: 17830
  • sample type: marine sediment sample
  • geographic location: Nanhai
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_3361.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_1755;97_2099;98_2577;99_3361&stattab=map
  • Last taxonomy: Streptomyces oceani subclade
  • 16S sequence: JN389519
  • Sequence Identity:
  • Total samples: 545
  • soil counts: 25
  • aquatic counts: 16
  • animal counts: 500
  • plant counts: 4

Sequence information

16S sequences

  • @ref: 17830
  • description: Streptomyces oceani strain SCSIO 02100 16S ribosomal RNA gene, partial sequence
  • accession: JN389519
  • length: 1453
  • database: ena
  • NCBI tax ID: 1075402

GC content

  • @ref: 17830
  • GC-content: 71.5

External links

@ref: 17830

culture collection no.: DSM 42043, CGMCC 4.7007, SCSIO 02100

straininfo link

  • @ref: 85093
  • straininfo: 403648

literature

  • topic: Phylogeny
  • Pubmed-ID: 22696167
  • title: Streptomyces oceani sp. nov., a new obligate marine actinomycete isolated from a deep-sea sample of seep authigenic carbonate nodule in South China Sea.
  • authors: Tian XP, Xu Y, Zhang J, Li J, Chen Z, Kim CJ, Li WJ, Zhang CS, Zhang S
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-012-9743-x
  • year: 2012
  • mesh: Carbonates/*metabolism, China, Geologic Sediments/*microbiology, Molecular Sequence Data, Oceans and Seas, Phylogeny, Seawater/*microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
17830Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42043)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42043
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69331Wink, J.https://cdn.dsmz.de/wink/DSM%2042043.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85093Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403648.1StrainInfo: A central database for resolving microbial strain identifiers