Strain identifier
BacDive ID: 160173
Type strain: 
Species: Rhizobium rhizophilum
Strain Designation: 7209-2
Strain history: <- J. L. Gao, Beijing Academy of Agriculture and Forestry Science; 7209-2 <- J. Sun
NCBI tax ID(s): 1850373 (species)
version 8.1 (current version)
General
@ref: 67077
BacDive-ID: 160173
DSM-Number: 103161
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Rhizobium rhizophilum 7209-2 is a mesophilic bacterium that was isolated from rhizosphere soil of cole.
NCBI tax id
- NCBI tax id: 1850373
- Matching level: species
strain history
- @ref: 67077
- history: <- J. L. Gao, Beijing Academy of Agriculture and Forestry Science; 7209-2 <- J. Sun
doi: 10.13145/bacdive160173.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium rhizophilum
- full scientific name: Rhizobium rhizophilum Gao et al. 2020
synonyms
- @ref: 20215
- synonym: Peteryoungia rhizophila
@ref: 67077
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium rhizophilum
full scientific name: Rhizobium rhizophilum Gao et al. 2020
strain designation: 7209-2
type strain: yes
Culture and growth conditions
culture medium
- @ref: 67077
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 67077
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67077
- sample type: rhizosphere soil of cole
- geographic location: Inner Mongulia
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67077
- description: Rhizobium sp. 7209-2 16S ribosomal RNA gene, partial sequence
- accession: KX017286
- length: 1366
- database: ena
- NCBI tax ID: 1850373
Genome sequences
- @ref: 66792
- description: Rhizobium rhizophilum 7209-2
- accession: GCA_004912145
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1850373
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 57.778 | no |
| gram-positive | no | 98.162 | no |
| anaerobic | no | 97.555 | no |
| aerobic | yes | 94.35 | no |
| halophile | no | 84.867 | no |
| spore-forming | no | 94.834 | no |
| glucose-util | yes | 91.494 | no |
| thermophile | no | 99.474 | yes |
| motile | yes | 90.112 | no |
| glucose-ferment | no | 90.389 | no |
External links
@ref: 67077
culture collection no.: DSM 103161, CGMCC 1.15691
straininfo link
- @ref: 112445
- straininfo: 400385
literature
- topic: Phylogeny
- Pubmed-ID: 32783806
- title: Rhizobium rhizophilum sp. nov., an indole acetic acid-producing bacterium isolated from rape (Brassica napus L.) rhizosphere soil.
- authors: Gao JL, Wang LW, Xue J, Tong S, Peng G, Sun YC, Zhang X, Sun JG
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004374
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, Brassica napus/*microbiology, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Indoleacetic Acids/*metabolism, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/isolation & purification, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67077 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103161 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103161) | |
| 112445 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400385.1 |