Strain identifier
BacDive ID: 160167
Type strain: 
Species: Rhizobium sp.
Strain Designation: Khangiran2
Strain history: <- J. M. Santini, Univ. College London, United Kingdom; Khangiran2 <- M. Dastgheib, Olympic Village; Khangiran2
NCBI tax ID(s): 391 (species)
General
@ref: 67071
BacDive-ID: 160167
DSM-Number: 106339
keywords: genome sequence, Bacteria, mesophilic
description: Rhizobium sp. Khangiran2 is a mesophilic bacterium that was isolated from contaminated soil sample obtained from a drilling mud pit.
NCBI tax id
- NCBI tax id: 391
- Matching level: species
strain history
- @ref: 67071
- history: <- J. M. Santini, Univ. College London, United Kingdom; Khangiran2 <- M. Dastgheib, Olympic Village; Khangiran2
doi: 10.13145/bacdive160167.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium sp.
- full scientific name: Rhizobium Frank 1889 (Approved Lists 1980)
synonyms
@ref synonym 20215 Heterorhizobium 20215 Paenirhizobium 20215 Alirhizobium 20215 Peteryoungia
@ref: 67071
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium sp.
full scientific name: Rhizobium sp.
strain designation: Khangiran2
type strain: no
Culture and growth conditions
culture medium
- @ref: 67071
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 67071
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67071
- sample type: contaminated soil sample obtained from a drilling mud pit
- geographic location: Khangiran Rural District, Central District of Sarakhs County, Razavi Khorasan Province
- country: Iran
- origin.country: IRN
- continent: Asia
- latitude: 36.5555
- longitude: 60.7991
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhizobium sp. Khangiran2 | GCA_902502895 | complete | ncbi | 1435607 |
| 66792 | Rhizobium sp. Khangiran2 | 1435607.3 | complete | patric | 1435607 |
| 66792 | Rhizobium sp. Khangiran2 | 2896540771 | complete | img | 1435607 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 63.808 | no |
| flagellated | no | 63.808 | no |
| gram-positive | no | 97.803 | no |
| gram-positive | no | 97.803 | no |
| anaerobic | no | 95.824 | no |
| anaerobic | no | 95.824 | no |
| aerobic | yes | 91.797 | no |
| aerobic | yes | 91.797 | no |
| halophile | no | 71.545 | no |
| halophile | no | 71.545 | no |
| spore-forming | no | 95.751 | no |
| spore-forming | no | 95.751 | no |
| thermophile | no | 98.062 | yes |
| thermophile | no | 98.062 | yes |
| glucose-util | yes | 90.646 | no |
| glucose-util | yes | 90.646 | no |
| motile | yes | 87.058 | no |
| motile | yes | 87.058 | no |
| glucose-ferment | no | 91.501 | no |
| glucose-ferment | no | 91.501 | no |
External links
@ref: 67071
culture collection no.: DSM 106339
straininfo link
- @ref: 112440
- straininfo: 396818
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67071 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-106339 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106339) | |
| 112440 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396818.1 |