Strain identifier
BacDive ID: 160089
Type strain: 
Species: Listeria monocytogenes
Strain Designation: FFH
Strain history: <- A. Flegler, Univ. Bonn; FFH
NCBI tax ID(s): 1639 (species)
version 9.1 (current version)
General
@ref: 66993
BacDive-ID: 160089
DSM-Number: 112142
keywords: genome sequence, Bacteria, Gram-positive
description: Listeria monocytogenes FFH is a Gram-positive bacterium that was isolated from Minced meat.
NCBI tax id
- NCBI tax id: 1639
- Matching level: species
strain history
- @ref: 66993
- history: <- A. Flegler, Univ. Bonn; FFH
doi: 10.13145/bacdive160089.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Listeriaceae
- genus: Listeria
- species: Listeria monocytogenes
- full scientific name: Listeria monocytogenes (Murray et al. 1926) Pirie 1940 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium monocytogenes
@ref: 66993
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Listeriaceae
genus: Listeria
species: Listeria monocytogenes
full scientific name: Listeria monocytogenes (Murray et al. 1926) Pirie 1940
strain designation: FFH
type strain: no
Morphology
colony morphology
- @ref: 68376
- type of hemolysis: beta
- hemolysis ability: 1
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 66993 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
| 66993 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 66993
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68376 | 4853 | esculin | + | hydrolysis |
| 68376 | 18333 | D-arabitol | + | builds acid from |
| 68376 | 65327 | D-xylose | - | builds acid from |
| 68376 | 62345 | L-rhamnose | + | builds acid from |
| 68376 | 320061 | methyl alpha-D-glucopyranoside | + | builds acid from |
| 68376 | 16988 | D-ribose | - | builds acid from |
| 68376 | 29042 | glucose 1-phosphate | - | builds acid from |
| 68376 | 16443 | D-tagatose | - | builds acid from |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68376 | alpha-mannosidase | + | 3.2.1.24 |
| 68376 | beta-glucosidase | + | 3.2.1.21 |
API LIST
| @ref | DIM | ESC | alpha MAN | DARL | XYL | RHA | MDG | RIB | G1P | TAG | beta HEM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 66993 | + | + | + | + | - | + | + | - | - | - | + |
| 66993 | +/- | + | + | + | - | + | + | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 66993
- sample type: Minced meat
- geographic location: Bonn (North Rhine-Westphalia)
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 50.7264
- longitude: 7.0919
Safety information
risk assessment
- @ref: 66993
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Listeria monocytogenes FFH
- accession: GCA_009377335
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1639
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 82.314 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 90.508 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 87.106 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 50.683 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.902 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 64.516 | no |
External links
@ref: 66993
culture collection no.: DSM 112142
straininfo link
- @ref: 112365
- straininfo: 401594
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 66993 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-112142 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 112142) | |
| 68376 | Automatically annotated from API LIST | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 112365 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401594.1 |