Strain identifier
BacDive ID: 160083
Type strain: 
Species: Lactobacillus sp.
Strain history: <- K. Watanabe, Yakult Central Inst. Microbiol. Res., Tokyo, Japan
NCBI tax ID(s): 565973 (species)
version 9 (current version)
General
@ref: 66987
BacDive-ID: 160083
DSM-Number: 21902
keywords: 16S sequence, Bacteria
description: Lactobacillus sp. DSM 21902 is a bacterium that was isolated from Japanese traditional fermented turnip "Sunki".
NCBI tax id
- NCBI tax id: 565973
- Matching level: species
strain history
- @ref: 66987
- history: <- K. Watanabe, Yakult Central Inst. Microbiol. Res., Tokyo, Japan
doi: 10.13145/bacdive160083.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactobacillus
- species: Lactobacillus sp.
- full scientific name: Lactobacillus Beijerinck 1901 (Approved Lists 1980)
@ref: 66987
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus sp.
full scientific name: Lactobacillus sp.
type strain: no
Culture and growth conditions
culture medium
- @ref: 66987
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 66987
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68371 | 17754 | glycerol | - | builds acid from |
| 68371 | 17113 | erythritol | - | builds acid from |
| 68371 | 17108 | D-arabinose | - | builds acid from |
| 68371 | 30849 | L-arabinose | + | builds acid from |
| 68371 | 16988 | D-ribose | + | builds acid from |
| 68371 | 65327 | D-xylose | + | builds acid from |
| 68371 | 65328 | L-xylose | - | builds acid from |
| 68371 | 15963 | ribitol | - | builds acid from |
| 68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
| 68371 | 12936 | D-galactose | + | builds acid from |
| 68371 | 17634 | D-glucose | + | builds acid from |
| 68371 | 15824 | D-fructose | + | builds acid from |
| 68371 | 16024 | D-mannose | - | builds acid from |
| 68371 | 17266 | L-sorbose | - | builds acid from |
| 68371 | 62345 | L-rhamnose | - | builds acid from |
| 68371 | 16813 | galactitol | - | builds acid from |
| 68371 | 17268 | myo-inositol | - | builds acid from |
| 68371 | 16899 | D-mannitol | - | builds acid from |
| 68371 | 17924 | D-sorbitol | - | builds acid from |
| 68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
| 68371 | 320061 | methyl alpha-D-glucopyranoside | + | builds acid from |
| 68371 | 59640 | N-acetylglucosamine | - | builds acid from |
| 68371 | 27613 | amygdalin | - | builds acid from |
| 68371 | 18305 | arbutin | - | builds acid from |
| 68371 | 4853 | esculin | + | builds acid from |
| 68371 | 17814 | salicin | - | builds acid from |
| 68371 | 17057 | cellobiose | - | builds acid from |
| 68371 | 17306 | maltose | + | builds acid from |
| 68371 | 17716 | lactose | - | builds acid from |
| 68371 | 28053 | melibiose | + | builds acid from |
| 68371 | 17992 | sucrose | + | builds acid from |
| 68371 | 27082 | trehalose | - | builds acid from |
| 68371 | 15443 | inulin | - | builds acid from |
| 68371 | 6731 | melezitose | + | builds acid from |
| 68371 | 16634 | raffinose | + | builds acid from |
| 68371 | 28017 | starch | - | builds acid from |
| 68371 | 28087 | glycogen | - | builds acid from |
| 68371 | 17151 | xylitol | - | builds acid from |
| 68371 | 28066 | gentiobiose | - | builds acid from |
| 68371 | 32528 | turanose | - | builds acid from |
| 68371 | 62318 | D-lyxose | - | builds acid from |
| 68371 | 16443 | D-tagatose | - | builds acid from |
| 68371 | 28847 | D-fucose | - | builds acid from |
| 68371 | 18287 | L-fucose | - | builds acid from |
| 68371 | 18333 | D-arabitol | - | builds acid from |
| 68371 | 18403 | L-arabitol | - | builds acid from |
| 68371 | 24265 | gluconate | + | builds acid from |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | |
| 68371 | Potassium 5-ketogluconate | + | builds acid from |
API 50CHac
| @ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66987 | - | - | - | - | + | + | + | - | - | - | + | + | + | - | - | - | - | - | - | - | - | + | - | - | - | + | - | - | + | - | + | + | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 66987
- sample type: Japanese traditional fermented turnip "Sunki"
- geographic location: Nagano prefecture
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_3539.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_367;97_831;98_967;99_3539&stattab=map
- Last taxonomy: Lentilactobacillus
- 16S sequence: AB462914
- Sequence Identity:
- Total samples: 4525
- soil counts: 442
- aquatic counts: 432
- animal counts: 3255
- plant counts: 396
Sequence information
16S sequences
- @ref: 66987
- description: Lactobacillus sp. YIT 11469 gene for 16S rRNA, partial sequence
- accession: AB462914
- length: 1566
- database: nuccore
- NCBI tax ID: 565973
External links
@ref: 66987
culture collection no.: DSM 21902, YIT 11469
straininfo link
- @ref: 112359
- straininfo: 407288
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66987 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21902 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21902) | |
| 68371 | Automatically annotated from API 50CH acid | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 112359 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407288.1 |