Strain identifier
BacDive ID: 160080
Type strain: 
Species: Limosilactobacillus reuteri subsp. murium
Strain Designation: lpuph1
Strain history: <- F. Li, Univ. Alberta, Edmonton, Canada; lpuph1
NCBI tax ID(s): 863368 (subspecies)
version 9.3 (current version)
General
@ref: 66984
BacDive-ID: 160080
DSM-Number: 110570
keywords: genome sequence, Bacteria, mesophilic, Gram-positive
description: Limosilactobacillus reuteri subsp. murium lpuph1 is a mesophilic, Gram-positive bacterium that was isolated from mouse gastrointestinal tract.
NCBI tax id
- NCBI tax id: 863368
- Matching level: subspecies
strain history
- @ref: 66984
- history: <- F. Li, Univ. Alberta, Edmonton, Canada; lpuph1
doi: 10.13145/bacdive160080.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Limosilactobacillus
- species: Limosilactobacillus reuteri subsp. murium
- full scientific name: Limosilactobacillus reuteri subsp. murium Li et al. 2021
@ref: 66984
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Limosilactobacillus
species: Limosilactobacillus reuteri subsp. murium
full scientific name: Limosilactobacillus reuteri subsp. murium Li et al. 2021
strain designation: lpuph1
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | positive | 90.1 | |
| 125438 | 90 | no | |
| 125438 | positive | 93.649 |
Culture and growth conditions
culture medium
- @ref: 66984
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 66984
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: microaerophile
- confidence: 93.4
spore formation
- @ref: 125439
- spore formation: no
- confidence: 94
Isolation, sampling and environmental information
isolation
- @ref: 66984
- sample type: mouse gastrointestinal tract
- geographic location: Lincoln, Nebraska
- country: USA
- origin.country: USA
- continent: North America
Sequence information
Genome sequences
- @ref: 66792
- description: Limosilactobacillus reuteri subsp. murium lpuph1
- accession: GCA_000179455
- assembly level: contig
- database: ncbi
- NCBI tax ID: 863368
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 93.649 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 81.562 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 94.752 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.082 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.836 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 90 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 94 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 85.3 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 90.1 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 93.4 |
External links
@ref: 66984
culture collection no.: DSM 110570, LMG 31634
straininfo link
- @ref: 112356
- straininfo: 400698
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 66984 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-110570 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110570) | |
| 112356 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400698.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |