Strain identifier
BacDive ID: 160080
Type strain: 
Species: Limosilactobacillus reuteri subsp. murium
Strain Designation: lpuph1
Strain history: <- F. Li, Univ. Alberta, Edmonton, Canada; lpuph1
NCBI tax ID(s): 863368 (subspecies)
General
@ref: 66984
BacDive-ID: 160080
DSM-Number: 110570
keywords: genome sequence, Bacteria, mesophilic
description: Limosilactobacillus reuteri subsp. murium lpuph1 is a mesophilic bacterium that was isolated from mouse gastrointestinal tract.
NCBI tax id
- NCBI tax id: 863368
- Matching level: subspecies
strain history
- @ref: 66984
- history: <- F. Li, Univ. Alberta, Edmonton, Canada; lpuph1
doi: 10.13145/bacdive160080.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Limosilactobacillus
- species: Limosilactobacillus reuteri subsp. murium
- full scientific name: Limosilactobacillus reuteri subsp. murium Li et al. 2021
@ref: 66984
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Limosilactobacillus
species: Limosilactobacillus reuteri subsp. murium
full scientific name: Limosilactobacillus reuteri subsp. murium Li et al. 2021
strain designation: lpuph1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 66984
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 66984
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66984
- sample type: mouse gastrointestinal tract
- geographic location: Lincoln, Nebraska
- country: USA
- origin.country: USA
- continent: North America
Sequence information
Genome sequences
- @ref: 66792
- description: Limosilactobacillus reuteri subsp. murium lpuph1
- accession: GCA_000179455
- assembly level: contig
- database: ncbi
- NCBI tax ID: 863368
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 96.085 | no |
| flagellated | no | 98.366 | no |
| gram-positive | yes | 97.349 | no |
| anaerobic | no | 75.99 | no |
| aerobic | no | 97.172 | no |
| halophile | yes | 89.342 | no |
| spore-forming | no | 94.592 | no |
| thermophile | no | 99.35 | yes |
| glucose-util | yes | 88.048 | no |
| glucose-ferment | yes | 90.534 | no |
External links
@ref: 66984
culture collection no.: DSM 110570, LMG 31634
straininfo link
- @ref: 112356
- straininfo: 400698
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 66984 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-110570 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110570) | |
| 112356 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400698.1 |