Strain identifier

BacDive ID: 160025

Type strain: No

Species: Anaerotruncus massiliensis

Strain Designation: AT3

Strain history: <- S. Khelaifia, Federation de bacteriologie et virologie hygiene hospitaliere, Hopital de la Timone, Marseille; AT3

NCBI tax ID(s): 1673720 (species)

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General

@ref: 66929

BacDive-ID: 160025

DSM-Number: 100567

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive

description: Anaerotruncus massiliensis AT3 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human stool specimen.

NCBI tax id

  • NCBI tax id: 1673720
  • Matching level: species

strain history

  • @ref: 66929
  • history: <- S. Khelaifia, Federation de bacteriologie et virologie hygiene hospitaliere, Hopital de la Timone, Marseille; AT3

doi: 10.13145/bacdive160025.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Oscillospiraceae
  • genus: Anaerotruncus
  • species: Anaerotruncus massiliensis
  • full scientific name: Anaerotruncus massiliensis Togo et al. 2019

@ref: 66929

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Oscillospiraceae

genus: Anaerotruncus

species: Anaerotruncus massiliensis

full scientific name: Anaerotruncus massiliensis Togo et al. 2019

strain designation: AT3

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

  • @ref: 66929
  • name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/339
  • composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 66929
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 99.396

spore formation

@refspore formationconfidence
69480no98.589
69481no92

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate+degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase+4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
66929-+----------+----------------

Isolation, sampling and environmental information

isolation

  • @ref: 66929
  • sample type: human stool specimen
  • geographic location: Marseille
  • country: France
  • origin.country: FRA
  • continent: Europe

taxonmaps

  • @ref: 69479
  • File name: preview.99_115626.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_154;96_2651;97_58859;98_78161;99_115626&stattab=map
  • Last taxonomy: Anaerotruncus massiliensis subclade
  • 16S sequence: LN866995
  • Sequence Identity:
  • Total samples: 48025
  • soil counts: 219
  • aquatic counts: 530
  • animal counts: 47192
  • plant counts: 84

Sequence information

16S sequences

  • @ref: 66929
  • description: Anaerotruncus sp. AT3 partial 16S rRNA gene, strain AT3
  • accession: LN866995
  • length: 1482
  • database: ena
  • NCBI tax ID: 1673720

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Anaerotruncus massiliensis AT3GCA_900199635scaffoldncbi1673720
66792Anaerotruncus massiliensis AT32891431378draftimg1673720

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno92no
motileno88.125no
flagellatedno96.709no
gram-positiveyes92.75no
anaerobicyes98.703no
aerobicno95.944no
halophileno87.637no
spore-formingno79.563no
thermophileno94.002yes
glucose-utilyes87.662no
glucose-fermentyes51.562no

External links

@ref: 66929

culture collection no.: DSM 100567, CSUR P2007

literature

  • topic: Phylogeny
  • Pubmed-ID: 30891246
  • title: Anaerotruncus massiliensis sp. nov., a succinate-producing bacterium isolated from human stool from an obese patient after bariatric surgery.
  • authors: Togo AH, Diop A, Dubourg G, Khelaifia S, Richez M, Armstrong N, Maraninchi M, Fournier PE, Raoult D, Million M
  • journal: New Microbes New Infect
  • DOI: 10.1016/j.nmni.2019.01.004
  • year: 2019

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66929Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100567Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100567)
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1