Strain identifier

BacDive ID: 15991

Type strain: No

Species: Nocardia italica

Strain Designation: S673, N9, A-0163

Strain history: CIP <- 1996, JCM <- KCC: strain A-0163 <- M. Goodfellow: strain N9 <- NCIB <- A. di Marco, Nocardia italica

NCBI tax ID(s): 1931 (species)

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General

@ref: 10856

BacDive-ID: 15991

DSM-Number: 43191

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Nocardia italica S673 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from Soil.

NCBI tax id

  • NCBI tax id: 1931
  • Matching level: species

strain history

@refhistory
10856<- NCIB (Nocardia italica) <- A. di Marco
67770KCC A-0163 <-- M. Goodfellow N9 <-- NCIB 9386 <-- A. di Marco.
120289CIP <- 1996, JCM <- KCC: strain A-0163 <- M. Goodfellow: strain N9 <- NCIB <- A. di Marco, Nocardia italica

doi: 10.13145/bacdive15991.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia italica
  • full scientific name: Nocardia italica Amici et al. 1966

@ref: 10856

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Nocardia

species: Nocardia italica

full scientific name: Streptomyces sp.

strain designation: S673, N9, A-0163

type strain: no

Morphology

cell morphology

  • @ref: 120289
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 120289
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10856GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
35737MEDIUM 116 - for Streptomyces, Nocardia, Streptosporangium and Mycobacterium chlorophenolicumyesDistilled water make up to (1000.000 ml);Agar (20.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g)
10856BHI MEDIUM WITH ADDITIONAL GLUCOSE (DSMZ Medium 215b)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium215b.pdf
120289CIP Medium 194yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=194
120289CIP Medium 116yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=116

culture temp

@refgrowthtypetemperaturerange
10856positivegrowth28mesophilic
35737positivegrowth30mesophilic
67770positivegrowth28mesophilic
120289positivegrowth25-41
120289nogrowth10psychrophilic
120289nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 120289
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
120289NaClpositivegrowth0-8 %
120289NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
120289citrate-carbon source16947
120289esculin+hydrolysis4853
120289hippurate+hydrolysis606565
120289nitrate-reduction17632
120289nitrite-reduction16301
120289nitrate-respiration17632

antibiotic resistance

  • @ref: 120289
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 120289
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12028915688acetoin-
12028917234glucose-

enzymes

@refvalueactivityec
120289oxidase-
120289beta-galactosidase+3.2.1.23
120289alcohol dehydrogenase-1.1.1.1
120289gelatinase-
120289amylase+
120289DNase-
120289caseinase-3.4.21.50
120289catalase+1.11.1.6
120289tween esterase+/-
120289gamma-glutamyltransferase+2.3.2.2
120289lecithinase-
120289lipase-
120289lysine decarboxylase-4.1.1.18
120289ornithine decarboxylase-4.1.1.17
120289phenylalanine ammonia-lyase-4.3.1.24
120289tryptophan deaminase-
120289urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase+3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120289-+++-+---+++---+++-+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120289-------------------------------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120289+++++----+++---+++++-+----+----+-+---------------++--+-----++-----------++----+++---+-+-++++-++-++-

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil

Safety information

risk assessment

  • @ref: 120289
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 10856

culture collection no.: DSM 43191, CBS 481.70, CCRC 12359, CIP 104822, IMRU 3856, JCM 3163, KCC A-0163, NCIB 9386, NRRL B-16174, BCRC 12359, CGMCC 4.1132, IFM 0852, NBRC 108226, NCIMB 9386

straininfo link

  • @ref: 85066
  • straininfo: 37998

Reference

@idauthorscataloguedoi/urltitle
10856Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43191)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43191
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
35737Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16773
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
85066Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID37998.1StrainInfo: A central database for resolving microbial strain identifiers
120289Curators of the CIPCollection of Institut Pasteur (CIP 104822)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104822