Strain identifier

BacDive ID: 159883

Type strain: Yes

Species: Solimonas fluminis

Strain Designation: HR-BB

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; HR-BB.

NCBI tax ID(s): 2086571 (species)

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General

@ref: 66609

BacDive-ID: 159883

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, Gram-negative, motile, rod-shaped

description: Solimonas fluminis HR-BB is an obligate aerobe, Gram-negative, motile bacterium that was isolated from freshwater river.

NCBI tax id

  • NCBI tax id: 2086571
  • Matching level: species

strain history

  • @ref: 67770
  • history: C. O. Jeon; Chung-Ang Univ., South Korea; HR-BB.

doi: 10.13145/bacdive159883.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Nevskiales
  • family: Nevskiaceae
  • genus: Solimonas
  • species: Solimonas fluminis
  • full scientific name: Solimonas fluminis Lee et al. 2018

@ref: 66609

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Nevskiales

family: Nevskiaceae

genus: Solimonas

species: Solimonas fluminis

strain designation: HR-BB

type strain: yes

Morphology

cell morphology

  • @ref: 66609
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: monotrichous, polar

colony morphology

  • @ref: 66609
  • colony color: white
  • medium used: R2A medium

Culture and growth conditions

culture medium

  • @ref: 66609
  • name: Reasoner's 2A agar (R2A)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
66609positivegrowth20-35
66609positiveoptimum25-30mesophilic
67770positivegrowth30mesophilic

culture pH

  • @ref: 66609
  • ability: positive
  • type: growth
  • pH: 7.0-8.0

Physiology and metabolism

oxygen tolerance

  • @ref: 66609
  • oxygen tolerance: obligate aerobe

halophily

  • @ref: 66609
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6660916024D-mannose+assimilation
6660916899D-mannitol+assimilation
6660917128adipate+assimilation
6660917306maltose+assimilation
6660917634D-glucose+assimilation
6660918401phenylacetate+assimilation
6660925115malate+assimilation
6660927689decanoate+assimilation
6660930849L-arabinose+assimilation
6660932032potassium gluconate+assimilation
6660953258sodium citrate+assimilation
6660959640N-acetylglucosamine+assimilation
6660917234glucose+fermentation
6660918186tyrosine-hydrolysis
6660928017starch-hydrolysis
6660953424tween 20-hydrolysis
66609casein-hydrolysis
666094853esculin+hydrolysis
666095291gelatin+hydrolysis
6660953426tween 80+hydrolysis
6660917632nitrate+reduction

metabolite production

@refChebi-IDmetaboliteproduction
6660935581indoleyes
6660917997dinitrogenno

enzymes

@refvalueactivityec
66609alpha-chymotrypsin-3.4.21.1
66609alpha-fucosidase-3.2.1.51
66609alpha-galactosidase-3.2.1.22
66609alpha-glucosidase-3.2.1.20
66609alpha-mannosidase-3.2.1.24
66609beta-galactosidase-3.2.1.23
66609beta-glucuronidase-3.2.1.31
66609catalase-1.11.1.6
66609cystine arylamidase-3.4.11.3
66609leucine arylamidase-3.4.11.1
66609N-acetyl-beta-glucosaminidase-3.2.1.52
66609trypsin-3.4.21.4
66609urease-3.5.1.5
66609valine arylamidase-
66609acid phosphatase+3.1.3.2
66609alkaline phosphatase+3.1.3.1
66609arginine dihydrolase+3.5.3.6
66609beta-galactopyranosidase+
66609beta-glucosidase+3.2.1.21
66609cytochrome oxidase+1.9.3.1
66609esterase (C 4)+
66609esterase Lipase (C 8)+
66609lipase (C 14)+
66609naphthol-AS-BI-phosphohydrolase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    66609C14:0 3OH / iso-C16:1 I4
    66609C12:10.5
    66609C16:1 w5c0.5
    66609C20:00.5
    66609C16:0 iso0.5
    66609C17:0 iso 3OH0.5
    66609C8:0 3OH0.7
    66609C18:00.9
    66609C18:1 w9c1.4
    66609C16:010.2
    66609C16:1 w7c / C16:1 w6c17.3
    66609C10:0 iso2.1
    66609C12:0 2OH2.1
    66609C14:02.3
    66609C12:0 3OH4.6
    66609C18:1 w7c / C18:1 w6c40.4
    66609C12:06.1
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A
  • incubation temperature: 25
  • software version: Sherlock 6.2B
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperatureisolation procedure
66609freshwater riverHan RiverRepublic of KoreaKORAsia37.5094126.965R2A5 days25The water sample was serially diluted in phosphate-buffered saline (PBS; 137 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, 2 mM KH2PO4, pH7.2)
67770Freshwater riverHan RiverRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#River (Creek)

Sequence information

16S sequences

  • @ref: 66609
  • description: Solimonas sp. strain HR-BB 16S ribosomal RNA gene, partial sequence
  • accession: MF682434
  • length: 1452
  • database: ena
  • NCBI tax ID: 2086571

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Solimonas fluminis HR-BB2833177308draftimg2086571
67770Solimonas fluminis HR-BBGCA_002930645contigncbi2086571

GC content

  • @ref: 66609
  • GC-content: 68.50
  • method: genome sequence analysis

External links

@ref: 66609

culture collection no.: KACC 19410, JCM 32268

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny30016233Solimonas fluminis sp. nov., isolated from a freshwater river.Lee Y, Lee B, Lee K, Jeon COInt J Syst Evol Microbiol10.1099/ijsem.0.0028652018Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome
Enzymology31485689Solimonas fluminis has an active latex-clearing protein.Birke J, Jendrossek DAppl Microbiol Biotechnol10.1007/s00253-019-10085-w2019Bacterial Proteins/genetics/isolation & purification/*metabolism, Biotransformation, Cloning, Molecular, Escherichia coli/genetics/metabolism, Gammaproteobacteria/*enzymology/genetics, Gene Expression, Latex/*metabolism, Oxygenases/genetics/isolation & purification/*metabolism, Recombinant Proteins/genetics/isolation & purification/metabolismMetabolism

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66609Yunho Lee, Boeun Lee, Kangseok Lee and Che Ok JeonSolimonas fluminis sp. nov., isolated from a freshwater river10.1099/ijsem.0.002865IJSEM 68: 2755-2759 201830016233
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/