Strain identifier

BacDive ID: 159866

Type strain: Yes

Species: Roseomonas radiodurans

Strain Designation: 17Sr1-1

Strain history: <- Myung Kyum, Kim, Seoul Womens Univ.

NCBI tax ID(s): 2231721 (species)

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General

@ref: 66603

BacDive-ID: 159866

keywords: 16S sequence, Bacteria, obligate aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Roseomonas radiodurans 17Sr1-1 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from irradiated soil.

NCBI tax id

  • NCBI tax id: 2231721
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Myung Kyum, Kim, Seoul Womens Univ.

doi: 10.13145/bacdive159866.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Roseomonas
  • species: Roseomonas radiodurans
  • full scientific name: Roseomonas radiodurans Kim et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Pararoseomonas radiodurans

@ref: 66603

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Roseomonas

species: Roseomonas radiodurans

strain designation: 17Sr1-1

type strain: yes

Morphology

cell morphology

  • @ref: 66603
  • gram stain: negative
  • cell length: 2.0-2.7 µm
  • cell width: 1.0-1.4 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 66603
  • colony size: 0.4-1 mm
  • colony color: pink
  • colony shape: circular
  • incubation period: 3 days
  • medium used: R2A medium

Culture and growth conditions

culture medium

@refnamegrowth
66603LB (Luria-Bertani) agaryes
66603MacConkeyno
66603Nutrient agar (NA)yes
66603Reasoner's 2A agar (R2A)yes
66603tryptic soy agar (TSA)yes

culture temp

@refgrowthtypetemperature
66603positivegrowth18-42
66603positiveoptimum28-30
67771positivegrowth25

culture pH

@refabilitytypepH
66603positivegrowth6.0-8.0
66603positiveoptimum6.5-7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
66603obligate aerobe
67771aerobe

spore formation

  • @ref: 66603
  • spore formation: no

halophily

  • @ref: 66603
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 2 %(w/v)

observation

  • @ref: 66603
  • observation: gamma ray resistance

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6660316024D-mannose-assimilation
6660316899D-mannitol-assimilation
6660317306maltose-assimilation
6660327689decanoate-assimilation
6660359640N-acetylglucosamine-assimilation
6660317128adipate+assimilation
6660317634D-glucose+assimilation
6660318401phenylacetate+assimilation
6660325115malate+assimilation
6660330849L-arabinose+assimilation
6660332032potassium gluconate+assimilation
6660353258sodium citrate+assimilation
6660317234glucose-fermentation
666034853esculin-hydrolysis
666035291gelatin-hydrolysis
6660317632nitrate-reduction

metabolite production

  • @ref: 66603
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
66603alpha-chymotrypsin-3.4.21.1
66603alpha-fucosidase-3.2.1.51
66603alpha-galactosidase-3.2.1.22
66603alpha-glucosidase-3.2.1.20
66603alpha-mannosidase-3.2.1.24
66603beta-galactosidase-3.2.1.23
66603beta-glucosidase-3.2.1.21
66603beta-glucuronidase-3.2.1.31
66603cystine arylamidase-3.4.11.3
66603cytochrome oxidase-1.9.3.1
66603lipase (C 14)-
66603N-acetyl-beta-glucosaminidase-3.2.1.52
66603trypsin-3.4.21.4
66603valine arylamidase-
66603acid phosphatase+3.1.3.2
66603alkaline phosphatase+3.1.3.1
66603arginine dihydrolase+3.5.3.6
66603catalase+1.11.1.6
66603esterase (C 4)+
66603esterase Lipase (C 8)+
66603leucine arylamidase+3.4.11.1
66603naphthol-AS-BI-phosphohydrolase+
66603urease+3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    66603C16:1 w7c / C16:1 w6c2
    66603C18:01.1
    66603C15:1 iso H / C13:0 3OH1.2
    66603C17:0 iso 3OH1.2
    66603C19:0 iso1.2
    66603C16:1 w5c1.5
    66603C16:1 iso I / C14:0 3OH2.2
    66603C18:0 3OH2.8
    66603C14:1 w5c3.6
    66603C16:04.2
    66603C17:1 iso w5c5.2
    66603C18:1 w7c / C18:1 w6c61.2
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A
  • incubation temperature: 25
  • incubation time: 3
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperature
66603irradiated soilNowongu, SeoulRepublic of KoreaKORAsia37.6281127.09R2A7 days25
67771From soilRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Engineered#Treatment

Sequence information

16S sequences

  • @ref: 66603
  • description: Roseomonas radiodurans strain 17Sr1-1 16S ribosomal RNA gene, partial sequence
  • accession: KY887689
  • length: 1451
  • database: nuccore
  • NCBI tax ID: 2231721

GC content

  • @ref: 66603
  • GC-content: 71.90
  • method: real time PCR (RTD-PCR)

External links

@ref: 66603

culture collection no.: KCTC 52899, NBRC 112872

literature

  • topic: Phylogeny
  • Pubmed-ID: 29916795
  • title: Roseomonas radiodurans sp. nov., a gamma-radiation-resistant bacterium isolated from gamma ray-irradiated soil.
  • authors: Kim JY, Kim DU, Kang MS, Jang JH, Kim SJ, Kim MJ, Lee JY, Lee YS, Zhang J, Lim S, Kim MK
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002852
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Gamma Rays, Methylobacteriaceae/*classification/isolation & purification/radiation effects, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Radiation Tolerance, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66603Ju-Young Kim, Dong-Uk Kim, Myung-Suk Kang, Jun Hwee Jang, Su Jeong Kim, Min Ji Kim, Ju Yeon Lee, Yoon Seo Lee, Jing Zhang, Sangyong Lim and Myung Kyum KimRoseomonas radiodurans sp. nov., a gamma-radiation-resistant bacterium isolated from gamma ray-irradiated soil10.1099/ijsem.0.002852IJSEM 68: 2443-2447 201829916795
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc