Strain identifier

BacDive ID: 159858

Type strain: Yes

Species: Arenimonas halophila

Strain history: <- Wonyong Kim, Chung-Ang Univ.

NCBI tax ID(s): 2185278 (species)

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General

@ref: 66570

BacDive-ID: 159858

keywords: 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Arenimonas halophila KCTC 62235 is an obligate aerobe, spore-forming, mesophilic bacterium that forms circular colonies and was isolated from soil.

NCBI tax id

  • NCBI tax id: 2185278
  • Matching level: species

strain history

@refhistory
67770W. Kim; Chung-Ang Univ., China; CAU 1453.
67771<- Wonyong Kim, Chung-Ang Univ.

doi: 10.13145/bacdive159858.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Arenimonas
  • species: Arenimonas halophila
  • full scientific name: Arenimonas halophila Kanjanasuntree et al. 2018

@ref: 66570

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacterales

family: Lysobacteraceae

genus: Arenimonas

species: Arenimonas halophila

type strain: yes

Morphology

cell morphology

  • @ref: 66570
  • gram stain: negative
  • cell length: 1.3-2.2 µm
  • cell width: 0.2-0.4 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 66570
  • colony color: white
  • colony shape: circular
  • incubation period: 3 days
  • medium used: Marine agar (MA)

Culture and growth conditions

culture medium

  • @ref: 66570
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
66570positiveoptimum30mesophilic
66570positivegrowth10-37
67770positivegrowth30mesophilic
67771positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
66570positiveoptimum6.5
66570positivegrowth5.5-9.5alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
66570obligate aerobe
67771aerobe

spore formation

  • @ref: 66570
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentrationhalophily level
66570NaClpositiveoptimum1 %(w/v)
66570NaClpositivegrowth0-7 %(w/v)slightly halophilic

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6657016024D-mannose-assimilation
6657016899D-mannitol-assimilation
6657017128adipate-assimilation
6657017306maltose-assimilation
6657017634D-glucose-assimilation
6657018401phenylacetate-assimilation
6657025115malate-assimilation
6657027689decanoate-assimilation
6657030849L-arabinose-assimilation
6657032032potassium gluconate-assimilation
6657053258sodium citrate-assimilation
6657059640N-acetylglucosamine-assimilation
665706731melezitose-builds acid from
6657012936D-galactose-builds acid from
6657015443inulin-builds acid from
6657015963ribitol-builds acid from
6657016024D-mannose-builds acid from
6657016634raffinose-builds acid from
6657016813galactitol-builds acid from
6657016899D-mannitol-builds acid from
6657016988D-ribose-builds acid from
6657017057cellobiose-builds acid from
6657017108D-arabinose-builds acid from
6657017113erythritol-builds acid from
6657017151xylitol-builds acid from
6657017306maltose-builds acid from
6657017634D-glucose-builds acid from
6657017716lactose-builds acid from
6657017754glycerol-builds acid from
6657017814salicin-builds acid from
6657017924D-sorbitol-builds acid from
6657017992sucrose-builds acid from
6657018287L-fucose-builds acid from
6657018305arbutin-builds acid from
6657018333D-arabitol-builds acid from
6657018403L-arabitol-builds acid from
6657027082trehalose-builds acid from
6657027613amygdalin-builds acid from
6657028017starch-builds acid from
6657028053melibiose-builds acid from
6657028066gentiobiose-builds acid from
6657028087glycogen-builds acid from
6657028847D-fucose-builds acid from
6657030849L-arabinose-builds acid from
6657032032potassium gluconate-builds acid from
6657043943methyl alpha-D-mannoside-builds acid from
6657059640N-acetylglucosamine-builds acid from
6657062345L-rhamnose-builds acid from
6657065327D-xylose-builds acid from
6657065328L-xylose-builds acid from
6657074863methyl beta-D-xylopyranoside-builds acid from
66570320061methyl alpha-D-glucopyranoside-builds acid from
66570potassium 2-dehydro-D-gluconate-builds acid from
6657016443D-tagatose+builds acid from
6657017268myo-inositol+builds acid from
66570potassium 5-dehydro-D-gluconate+builds acid from
6657015824D-fructose+/-builds acid from
6657017266L-sorbose+/-builds acid from
6657032528turanose+/-builds acid from
6657062318D-lyxose+/-builds acid from
66570esculin ferric citrate+/-builds acid from
6657017234glucose-fermentation
665704853esculin-hydrolysis
6657028017starch-hydrolysis
665705291gelatin+hydrolysis
6657016199urea+hydrolysis
66570casein+hydrolysis
6657017632nitrate-reduction

metabolite production

  • @ref: 66570
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
66570acid phosphatase-3.1.3.2
66570alpha-fucosidase-3.2.1.51
66570alpha-galactosidase-3.2.1.22
66570alpha-glucosidase-3.2.1.20
66570alpha-mannosidase-3.2.1.24
66570beta-galactosidase-3.2.1.23
66570beta-glucosidase-3.2.1.21
66570beta-glucuronidase-3.2.1.31
66570cystine arylamidase-3.4.11.3
66570lipase (C 14)-
66570N-acetyl-beta-glucosaminidase-3.2.1.52
66570alkaline phosphatase+3.1.3.1
66570catalase+1.11.1.6
66570cytochrome oxidase+1.9.3.1
66570esterase Lipase (C 8)+
66570leucine arylamidase+3.4.11.1
66570lysine decarboxylase+4.1.1.18
66570naphthol-AS-BI-phosphohydrolase+
66570trypsin+3.4.21.4
66570alpha-chymotrypsin+/-3.4.21.1
66570arginine dihydrolase+/-3.5.3.6
66570esterase (C 4)+/-
66570valine arylamidase+/-

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    66570C10:0 iso1.1
    66570C12:0 iso 3OH1.1
    66570C16:1 iso H1.1
    66570C17:0 iso1.3
    66570C16:0 iso16.5
    66570C17:1 iso w9c / C16:0 10-methyl17.7
    66570C15:1 iso H / C13:0 3OH2.1
    66570C16:02.2
    66570C15:1 iso F2.4
    66570C16:1 w7c / C16:1 w6c2.7
    66570C11:0 iso3.9
    66570C15:0 iso30.7
    66570C14:0 iso7.1
    66570C11:0 iso 3OH9.1
  • type of FA analysis: whole cell analysis
  • incubation medium: MB
  • incubation temperature: 30
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperature
66570soilModoRepublic of KoreaKORAsia37.5367126.414MA7 days30
67770Soil from ModoRepublic of KoreaKORAsia
67771From soilModoRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_47266.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_3434;97_26804;98_34109;99_47266&stattab=map
  • Last taxonomy: Arenimonas caeni
  • 16S sequence: MG214546
  • Sequence Identity:
  • Total samples: 781
  • soil counts: 259
  • aquatic counts: 398
  • animal counts: 94
  • plant counts: 30

Sequence information

16S sequences

  • @ref: 66570
  • description: Arenimonas halophila 16S ribosomal RNA gene, partial sequence
  • accession: MG214546
  • length: 1547
  • database: ena
  • NCBI tax ID: 2185278

GC content

  • @ref: 66570
  • GC-content: 67.30
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 66570

culture collection no.: KCTC 62235, NBRC 113093, CAU 1453, JCM 32565

literature

  • topic: Phylogeny
  • Pubmed-ID: 29745867
  • title: Arenimonas halophila sp. nov., isolated from soil.
  • authors: Kanjanasuntree R, Kim JH, Yoon JH, Sukhoom A, Kantachote D, Kim W
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002801
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry, Xanthomonadaceae/*classification/genetics/isolation & purification
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66570Rungravee Kanjanasuntree, Jong-Hwa Kim, Jung-Hoon Yoon, Ampaitip Sukhoom, Duangporn Kantachote and Wonyong KimArenimonas halophila sp. nov., isolated from soil10.1099/ijsem.0.002801IJSEM 68: 2188-2193 201829745867
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/