Strain identifier
version 8.1 (current version)
General
@ref: 66744
BacDive-ID: 159848
DSM-Number: 105767
keywords: Bacteria, spore-forming, mesophilic, Gram-negative, rod-shaped
description: Sorangium dawidii DSM 105767 is a spore-forming, mesophilic, Gram-negative bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 2093424
- Matching level: species
doi: 10.13145/bacdive159848.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Myxococcales
- family: Polyangiaceae
- genus: Sorangium
- species: Sorangium dawidii
- full scientific name: Sorangium dawidii Mohr et al. 2018
@ref: 66744
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Myxococcales
family: Polyangiaceae
genus: Sorangium
species: Sorangium dawidii
type strain: yes
Morphology
cell morphology
- @ref: 66744
- gram stain: negative
- cell length: 1.9-4.5 µm
- cell width: 0.7-1.1 µm
- cell shape: rod-shaped
- motility: no
colony morphology
@ref | colony color | medium used |
---|---|---|
66744 | bright orange | P agar |
66744 | bright orange | Stan 21 with filter paper |
66744 | bright orange | liquid medium |
66744 | yellow to light orange | VY/2 AGAR |
66744 | yellow to light orange | CY-AGAR |
Culture and growth conditions
culture medium
@ref | name | growth |
---|---|---|
66744 | CY-AGAR | yes |
66744 | liquid medium | yes |
66744 | P agar | yes |
66744 | Stan 21 with filter paper | yes |
66744 | VY/2 AGAR | yes |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
66744 | positive | optimum | 34 | mesophilic |
66744 | positive | growth | 18-37 |
culture pH
@ref | ability | type | pH |
---|---|---|---|
66744 | positive | growth | 6.5-7.5 |
66744 | positive | optimum | 7.0-7.5 |
Physiology and metabolism
spore formation
- @ref: 66744
- spore description: 0.65 µm wide and 1.1 µm long
- type of spore: myxospore
- spore formation: yes
observation
- @ref: 66744
- observation: Distinctive swarming activity on CY and VY/2. Slight agar depression on VY/2. Orange scattered sporangioles can be observed on Stan 21 with filter paper after several weeks.
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. | is resistant | resistance conc. |
---|---|---|---|---|---|---|---|
66744 | 28971 | ampicillin | yes | yes | 50 µg/mL | ||
66744 | 23066 | cephalosporin | yes | yes | 50 µg/mL | ||
66744 | 71321 | fusidate | yes | yes | 50 µg/mL | ||
66744 | 24753 | hygromycin | yes | yes | 50 µg/mL | ||
66744 | 27701 | oxytetracycline | yes | yes | 50 µg/mL | ||
66744 | 9215 | spectinomycin | yes | yes | 50 µg/mL | ||
66744 | 28669 | bacitracin | yes | yes | 50 µg/mL | ||
66744 | 17833 | gentamicin | yes | yes | 50 µg/mL | ||
66744 | 6104 | kanamycin | yes | yes | 50 µg/mL | ||
66744 | 59062 | polymyxin | yes | yes | 50 µg/mL | ||
66744 | 29693 | thiostrepton | yes | yes | 50 µg/mL | ||
66744 | 45924 | trimethoprim | yes | yes | 50 µg/mL |
enzymes
@ref | value | activity | ec |
---|---|---|---|
66744 | alpha-fucosidase | - | 3.2.1.51 |
66744 | alpha-galactosidase | - | 3.2.1.22 |
66744 | alpha-glucosidase | - | 3.2.1.20 |
66744 | alpha-mannosidase | - | 3.2.1.24 |
66744 | beta-glucuronidase | - | 3.2.1.31 |
66744 | catalase | - | 1.11.1.6 |
66744 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
66744 | acid phosphatase | + | 3.1.3.2 |
66744 | alkaline phosphatase | + | 3.1.3.1 |
66744 | alpha-chymotrypsin | + | 3.4.21.1 |
66744 | beta-galactosidase | + | 3.2.1.23 |
66744 | beta-glucosidase | + | 3.2.1.21 |
66744 | cystine arylamidase | + | 3.4.11.3 |
66744 | cytochrome oxidase | + | 1.9.3.1 |
66744 | esterase (C 4) | + | |
66744 | esterase Lipase (C 8) | + | |
66744 | leucine aminopeptidase | + | 3.4.1.1 |
66744 | leucine arylamidase | + | 3.4.11.1 |
66744 | lipase (C 14) | + | |
66744 | naphthol-AS-BI-phosphohydrolase | + | |
66744 | trypsin | + | 3.4.21.4 |
66744 | valine arylamidase | + |
Isolation, sampling and environmental information
isolation
- @ref: 66744
- sample type: soil
- country: Switzerland
- origin.country: CHE
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Sequence information
GC content
- @ref: 66744
- GC-content: 71.4
- method: genome sequence analysis
External links
@ref: 66744
culture collection no.: DSM 105767, NCCB 100641, Soce 362
literature
- topic: Phylogeny
- Pubmed-ID: 30234476
- title: A polyphasic approach leads to seven new species of the cellulose-decomposing genus Sorangium, Sorangium ambruticinum sp. nov., Sorangium arenae sp. nov., Sorangium bulgaricum sp. nov., Sorangium dawidii sp. nov., Sorangium kenyense sp. nov., Sorangium orientale sp. nov. and Sorangium reichenbachii sp. nov.
- authors: Mohr KI, Wolf C, Nubel U, Szafranska AK, Steglich M, Hennessen F, Gemperlein K, Kampfer P, Martin K, Muller R, Wink J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003034
- year: 2018
- mesh: Bacterial Typing Techniques, Cellulose/*metabolism, DNA, Bacterial/genetics, Genes, Bacterial, Myxococcales/*classification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
66744 | Kathrin I. Mohr, Corinna Wolf, Ulrich Nübel, Anna K. Szafranska, Matthias Steglich, Fabienne Hennessen, Katja Gemperlein, Peter Kaempfer, Karin Martin, Rolf Möller and Joachim Wink | A polyphasic approach leads to seven new species of the cellulose-decomposing genus Sorangium, Sorangium ambruticinum sp. nov., Sorangium arenae sp. nov., Sorangium bulgaricum sp. nov., Sorangium dawidii sp. nov., Sorangium kenyense sp. nov., Sorangium orientale sp. nov. and Sorangium reichenbachii sp. nov. | 10.1099/ijsem.0.003034 | IJSEM 68: 3576-3586 2018 | 30234476 |