Strain identifier

BacDive ID: 159847

Type strain: Yes

Species: Sorangium arenae

NCBI tax ID(s): 2093421 (species)

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General

@ref: 66744

BacDive-ID: 159847

DSM-Number: 105768

keywords: Bacteria, spore-forming, mesophilic, Gram-negative, rod-shaped

description: Sorangium arenae DSM 105768 is a spore-forming, mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 2093421
  • Matching level: species

doi: 10.13145/bacdive159847.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Myxococcales
  • family: Polyangiaceae
  • genus: Sorangium
  • species: Sorangium arenae
  • full scientific name: Sorangium arenae Mohr et al. 2018

@ref: 66744

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Myxococcales

family: Polyangiaceae

genus: Sorangium

species: Sorangium arenae

type strain: yes

Morphology

cell morphology

  • @ref: 66744
  • gram stain: negative
  • cell length: 2.3-7.3 µm
  • cell width: 0.8-1.2 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

@refcolony colormedium usedcolony shape
66744bright orangeP agar
66744bright orangeCY-AGAR
66744orangeliquid CY/H medium
66744transparent to light orangeVY/2 AGARcircular

Culture and growth conditions

culture medium

@refnamegrowth
66744CY-AGARyes
66744liquid CY/H mediumyes
66744P agaryes
66744VY/2 AGARyes

culture temp

@refgrowthtypetemperaturerange
66744positiveoptimum34mesophilic
66744positivegrowth18-37

culture pH

@refabilitytypepH
66744positiveoptimum7.2
66744positivegrowth6.5-8.0

Physiology and metabolism

spore formation

  • @ref: 66744
  • spore description: 0.55 µm wide and 0.95 µm long
  • type of spore: myxospore
  • spore formation: yes

observation

  • @ref: 66744
  • observation: Orange-coloured, scattered sporangioles can be observed on E. coli bait (water agar) and CY agar.

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
6674428669bacitracinyesyes50 µg/mL
6674417833gentamicinyesyes50 µg/mL
6674424753hygromycinyesyes50 µg/mL
667446104kanamycinyesyes50 µg/mL
6674459062polymyxinyesyes50 µg/mL
6674445924trimethoprimyesyes50 µg/mL
6674428971ampicillinyesyes50 µg/mL
6674423066cephalosporinyesyes50 µg/mL
6674471321fusidateyesyes50 µg/mL
6674427701oxytetracyclineyesyes50 µg/mL
667449215spectinomycinyesyes50 µg/mL
6674429693thiostreptonyesyes50 µg/mL

enzymes

@refvalueactivityec
66744alpha-fucosidase-3.2.1.51
66744alpha-mannosidase-3.2.1.24
66744beta-glucuronidase-3.2.1.31
66744lipase (C 14)-
66744acid phosphatase+3.1.3.2
66744alkaline phosphatase+3.1.3.1
66744alpha-chymotrypsin+3.4.21.1
66744alpha-galactosidase+3.2.1.22
66744alpha-glucosidase+3.2.1.20
66744beta-galactosidase+3.2.1.23
66744beta-glucosidase+3.2.1.21
66744catalase+1.11.1.6
66744cystine arylamidase+3.4.11.3
66744cytochrome oxidase+1.9.3.1
66744esterase (C 4)+
66744esterase Lipase (C 8)+
66744leucine aminopeptidase+3.4.1.1
66744leucine arylamidase+3.4.11.1
66744N-acetyl-beta-glucosaminidase+3.2.1.52
66744naphthol-AS-BI-phosphohydrolase+
66744trypsin+3.4.21.4
66744valine arylamidase+

Isolation, sampling and environmental information

isolation

  • @ref: 66744
  • sample type: soil
  • geographic location: Naispi
  • country: Namibia
  • origin.country: NAM
  • continent: Africa

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

GC content

  • @ref: 66744
  • GC-content: 71.6
  • method: genome sequence analysis

External links

@ref: 66744

culture collection no.: DSM 105768, NCCB 100643, Soce 1078

literature

  • topic: Phylogeny
  • Pubmed-ID: 30234476
  • title: A polyphasic approach leads to seven new species of the cellulose-decomposing genus Sorangium, Sorangium ambruticinum sp. nov., Sorangium arenae sp. nov., Sorangium bulgaricum sp. nov., Sorangium dawidii sp. nov., Sorangium kenyense sp. nov., Sorangium orientale sp. nov. and Sorangium reichenbachii sp. nov.
  • authors: Mohr KI, Wolf C, Nubel U, Szafranska AK, Steglich M, Hennessen F, Gemperlein K, Kampfer P, Martin K, Muller R, Wink J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003034
  • year: 2018
  • mesh: Bacterial Typing Techniques, Cellulose/*metabolism, DNA, Bacterial/genetics, Genes, Bacterial, Myxococcales/*classification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66744Kathrin I. Mohr, Corinna Wolf, Ulrich Nübel, Anna K. Szafranska, Matthias Steglich, Fabienne Hennessen, Katja Gemperlein, Peter Kaempfer, Karin Martin, Rolf Möller and Joachim WinkA polyphasic approach leads to seven new species of the cellulose-decomposing genus Sorangium, Sorangium ambruticinum sp. nov., Sorangium arenae sp. nov., Sorangium bulgaricum sp. nov., Sorangium dawidii sp. nov., Sorangium kenyense sp. nov., Sorangium orientale sp. nov. and Sorangium reichenbachii sp. nov.10.1099/ijsem.0.003034IJSEM 68: 3576-3586 201830234476