Strain identifier

BacDive ID: 159724

Type strain: Yes

Species: Glycomyces xiaoerkulensis

Strain history: <- Wang Yang, Tarim Univ.

NCBI tax ID(s): 2038139 (species)

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General

@ref: 66594

BacDive-ID: 159724

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Glycomyces xiaoerkulensis CCTCC AA 2017005 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from silt sample.

NCBI tax id

  • NCBI tax id: 2038139
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Wang Yang, Tarim Univ.

doi: 10.13145/bacdive159724.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Glycomycetales
  • family: Glycomycetaceae
  • genus: Glycomyces
  • species: Glycomyces xiaoerkulensis
  • full scientific name: Glycomyces xiaoerkulensis Wang et al. 2018

@ref: 66594

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Glycomycetales

family: Glycomycetaceae

genus: Glycomyces

species: Glycomyces xiaoerkulensis

type strain: yes

Morphology

cell morphology

  • @ref: 66594
  • gram stain: positive

multicellular morphology

  • @ref: 66594
  • forms multicellular complex: yes
  • further description: The aerial mycelium is straight or flexuous with few branches; no chains of square-ended conidia are produced on the aerial mycelium.

Culture and growth conditions

culture medium

@refnamegrowth
66594Czapek's agaryes
66594Gause's agaryes
66594ISP 1yes
66594ISP 2yes
66594ISP 3yes
66594ISP 4yes
66594ISP 5yes
66594ISP 6yes
66594ISP 7yes

culture temp

@refgrowthtypetemperaturerange
66594positiveoptimum37mesophilic
66594positivegrowth20-40
67771positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
66594positiveoptimum8
66594positivegrowth6-13alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
66594aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
66594NaClpositivegrowth3-17 %
66594NaClpositiveoptimum5 %(w/v)

observation

@refobservation
66594filamentous actinomycetes
66594non-acid-fast

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
66594milk+assimilation
66594melezitose-builds acid from6731
66594D-fructose-builds acid from15824
66594chitosan-builds acid from16261
66594raffinose-builds acid from16634
66594maltose-builds acid from17306
66594xylose-builds acid from18222
66594mannitol-builds acid from29864
66594L-rhamnose-builds acid from62345
66594D-fructose-carbon source15824
66594raffinose-carbon source16634
66594maltose-carbon source17306
66594xylose-carbon source18222
66594mannitol-carbon source29864
66594L-rhamnose-carbon source62345
66594melezitose+carbon source6731
66594chitosan+carbon source16261
66594urea-degradation16199
66594cellulose-degradation62968
66594starch-hydrolysis28017
66594tween 80-hydrolysis53426
66594gelatin+hydrolysis5291
66594tween 40+hydrolysis53423
66594tween 20+hydrolysis53424
66594tween 60+hydrolysis53425
66594nitrate+reduction17632

metabolite production

@refChebi-IDmetaboliteproduction
6659416136hydrogen sulfideyes
6659489634melaninno

enzymes

@refvalueactivityec
66594cytochrome oxidase-1.9.3.1
66594catalase+1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperatureisolation procedure
66594silt sampleXiaoerkule Lake is located in Atush city of Xinjiang, Xinjiang provinceChinaCHNAsia40.216677.6International Streptomyces Project 4containing 15 % (w/v) NaCl, at pH 72 weeks37standard dilution plate method
67771From soil, xiaoerkule lakeXinjiangChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Mud (Sludge)

Sequence information

16S sequences

  • @ref: 66594
  • description: Glycomyces sp. TRM 41368 16S ribosomal RNA gene, partial sequence
  • accession: MF669725
  • length: 1428
  • database: ena
  • NCBI tax ID: 2038139

GC content

  • @ref: 66594
  • GC-content: 69.9
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 66594

culture collection no.: CCTCC AA 2017005, KCTC 39932, TRM 41368

literature

  • topic: Phylogeny
  • Pubmed-ID: 29985122
  • title: Glycomyces xiaoerkulensis sp. nov., isolated from Xiaoerkule lake in Xinjiang, China.
  • authors: Wang Y, Luo XX, Xia ZF, Wan CX, Alim A, Zhang LL
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002842
  • year: 2018
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Lakes/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66594Yang Wang, Xiao-Xia Luo, Zhan-Feng Xia, Chuan-Xing Wan, Almira Alim, Li-Li ZhangGlycomyces xiaoerkulensis sp. nov., isolated from Xiaoerkule lake in Xinjiang, China10.1099/ijsem.0.002842IJSEM 68: 2722-2726 201829985122
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc