Strain identifier
BacDive ID: 159694
Type strain: 
Species: Corallococcus aberystwythensis
Strain Designation: AB050A
Strain history: <- P. Livingstone, Aberystwyth University, Dept. IBERS; AB050A <-
NCBI tax ID(s): 2316722 (species)
version 8.1 (current version)
General
@ref: 66545
BacDive-ID: 159694
DSM-Number: 108846
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Corallococcus aberystwythensis AB050A is a mesophilic bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 2316722
- Matching level: species
strain history
- @ref: 66545
- history: <- P. Livingstone, Aberystwyth University, Dept. IBERS; AB050A <-
doi: 10.13145/bacdive159694.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Myxococcales
- family: Myxococcaceae
- genus: Corallococcus
- species: Corallococcus aberystwythensis
- full scientific name: Corallococcus aberystwythensis Livingstone et al. 2020
@ref: 66545
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Myxococcales
family: Myxococcaceae
genus: Corallococcus
species: Corallococcus aberystwythensis
full scientific name: Corallococcus aberystwythensis Livingstone et al. 2020
strain designation: AB050A
type strain: yes
Morphology
multimedia
- @ref: 66545
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_108846.jpg
- caption: DSM 108846 on medium 9 at 28 °C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 66545
- name: VY/2 AGAR (DSMZ Medium 9)
- growth: yes
- link: https://mediadive.dsmz.de/medium/9
- composition: Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
culture temp
- @ref: 66545
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66545
- sample type: Soil
- geographic location: Aberystwyth, Wales
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Sequence information
16S sequences
- @ref: 66545
- description: Corallococcus exiguus strain AB050A 16S ribosomal RNA gene, partial sequence
- accession: MF163387.1
- length: 1324
- database: ena
- NCBI tax ID: 2316722
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Corallococcus aberystwythensis AB050A | GCA_003612165 | contig | ncbi | 2316722 |
| 66792 | Corallococcus aberystwythensis AB050A | 2833839164 | draft | img | 2316722 |
External links
@ref: 66545
culture collection no.: DSM 108846, NBRC 114019
straininfo link
- @ref: 112164
- straininfo: 399145
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 31676482 | Predatory Organisms with Untapped Biosynthetic Potential: Descriptions of Novel Corallococcus Species C. aberystwythensis sp. nov., C. carmarthensis sp. nov., C. exercitus sp. nov., C. interemptor sp. nov., C. llansteffanensis sp. nov., C. praedator sp. nov., C. sicarius sp. nov., and C. terminator sp. nov. | Livingstone PG, Ingleby O, Girdwood S, Cookson AR, Morphew RM, Whitworth DE | Appl Environ Microbiol | 10.1128/AEM.01931-19 | 2020 | *Food Chain, *Genome, Bacterial, Myxococcales/*classification/genetics/metabolism, Phylogeny | Genetics |
| Phylogeny | 35041085 | Corallococcus silvisoli sp. nov., a novel myxobacterium isolated from subtropical forest soil. | Zhang XJ, Feng GD, Liu Y, Zhou Y, Deng X, Yao Q, Zhu H | Arch Microbiol | 10.1007/s00203-021-02725-5 | 2022 | Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids, Forests, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil, *Soil Microbiology | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66545 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-108846 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108846) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 112164 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399145.1 |