Strain identifier
BacDive ID: 159689
Type strain: 
Species: Mycobacterium palauense
Strain Designation: SCRIPP CNJ 910
Strain history: <- P. Jensen, Scripps Inst. Oceonography, USA <- E. Gontang
NCBI tax ID(s): 2034511 (species)
version 8.1 (current version)
General
@ref: 66540
BacDive-ID: 159689
DSM-Number: 44914
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Mycobacterium palauense SCRIPP CNJ 910 is a mesophilic, Gram-positive bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 2034511
- Matching level: species
strain history
- @ref: 66540
- history: <- P. Jensen, Scripps Inst. Oceonography, USA <- E. Gontang
doi: 10.13145/bacdive159689.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium palauense
- full scientific name: Mycobacterium palauense Nouioui et al. 2019
@ref: 66540
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium palauense
full scientific name: Mycobacterium palauense Nouioui et al. 2019
strain designation: SCRIPP CNJ 910
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 66540
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 66540
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.448
Isolation, sampling and environmental information
isolation
- @ref: 66540
- sample type: marine sediment
- country: Palau
- origin.country: PLW
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
Sequence information
16S sequences
- @ref: 66540
- description: Mycobacterium palauense 16S ribosomal RNA gene, partial sequence
- accession: MF769712
- length: 1522
- database: ena
- NCBI tax ID: 2034511
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycobacterium palauense CECT 8779 | GCA_002592005 | scaffold | ncbi | 2034511 |
| 66792 | Mycobacterium sp. CECT 8779 | 2034511.3 | wgs | patric | 2034511 |
| 66792 | Mycobacterium palauense CECT 8779 | 2862830631 | draft | img | 2034511 |
GC content
- @ref: 66540
- GC-content: 69.4
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 65 | no |
| flagellated | no | 98.542 | no |
| gram-positive | yes | 89.37 | no |
| anaerobic | no | 98.865 | no |
| aerobic | yes | 81.254 | no |
| halophile | no | 87.549 | no |
| spore-forming | no | 85.81 | no |
| glucose-util | yes | 88.431 | no |
| thermophile | no | 99.054 | yes |
| motile | no | 94.075 | no |
| glucose-ferment | no | 91.081 | no |
External links
@ref: 66540
culture collection no.: DSM 44914, CECT 8779
straininfo link
- @ref: 112159
- straininfo: 396849
literature
- topic: Phylogeny
- Pubmed-ID: 29404824
- title: Formal description of Mycobacterium neglectum sp. nov. and Mycobacterium palauense sp. nov., rapidly growing actinobacteria.
- authors: Nouioui I, Carro L, Sangal V, Jando M, Igual JM, Goodfellow M, Klenk HP
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-018-1029-5
- year: 2018
- mesh: DNA, Bacterial/genetics, Multilocus Sequence Typing, Mycobacterium/*classification/genetics/growth & development/*isolation & purification, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66540 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44914 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44914) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 112159 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396849.1 |