Strain identifier
BacDive ID: 159657
Type strain: 
Species: Kyrpidia spormannii
Strain Designation: COOX1
Strain history: <- C. Hogendoorn, Department of Microbiology, Radboud University,Nijmegen, Netherlands; COOX1
NCBI tax ID(s): 2055160 (species)
version 8.1 (current version)
General
@ref: 66507
BacDive-ID: 159657
DSM-Number: 109471
keywords: genome sequence, Bacteria, thermophilic
description: Kyrpidia spormannii COOX1 is a thermophilic bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 2055160
- Matching level: species
strain history
- @ref: 66507
- history: <- C. Hogendoorn, Department of Microbiology, Radboud University,Nijmegen, Netherlands; COOX1
doi: 10.13145/bacdive159657.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Alicyclobacillaceae
- genus: Kyrpidia
- species: Kyrpidia spormannii
- full scientific name: Kyrpidia spormannii Reiner et al. 2018
@ref: 66507
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Alicyclobacillaceae
genus: Kyrpidia
species: Kyrpidia spormannii
full scientific name: Kyrpidia spormannii Reiner et al. 2018
strain designation: COOX1
type strain: no
Culture and growth conditions
culture medium
- @ref: 66507
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 66507
- growth: positive
- type: growth
- temperature: 50
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 66507
- sample type: Soil
- geographic location: Favare Grande, Pantelleria Island
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 66507
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Kyrpidia spormannii COOX1 | GCA_018802245 | complete | ncbi | 2055160 |
| 66792 | Kyrpidia spormannii COOX1 | GCA_902829275 | complete | ncbi | 2055160 |
| 66792 | Kyrpidia spormannii strain COOX1 | 2055160.9 | complete | patric | 2055160 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 81.302 | no |
| gram-positive | yes | 68.956 | no |
| anaerobic | no | 88.897 | no |
| aerobic | yes | 76.529 | no |
| halophile | no | 97.716 | no |
| spore-forming | yes | 91.291 | no |
| thermophile | yes | 99.998 | yes |
| motile | yes | 76.676 | no |
| glucose-util | yes | 83.534 | no |
| glucose-ferment | no | 91.067 | no |
External links
@ref: 66507
culture collection no.: DSM 109471
straininfo link
- @ref: 112131
- straininfo: 403414
literature
- Pubmed-ID: 32508778
- title: Hydrogen and Carbon Monoxide-Utilizing Kyrpidia spormannii Species From Pantelleria Island, Italy.
- authors: Hogendoorn C, Pol A, Picone N, Cremers G, van Alen TA, Gagliano AL, Jetten MSM, D'Alessandro W, Quatrini P, Op den Camp HJM
- journal: Front Microbiol
- DOI: 10.3389/fmicb.2020.00951
- year: 2020
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66507 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-109471 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 109471) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 112131 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403414.1 |