Strain identifier
BacDive ID: 159597
Type strain: 
Species: Pseudohalocynthiibacter aestuariivivens
Strain Designation: BS-W9
Strain history: <- J.-S. Lee, KCTC; KCTC 42348 <- J.-H. Yoon, Sungkyunkwan Univ., Republic of Korea; BS-W9
NCBI tax ID(s): 1591409 (species)
General
@ref: 66423
BacDive-ID: 159597
DSM-Number: 110604
keywords: genome sequence, 16S sequence, Bacteria
description: Pseudohalocynthiibacter aestuariivivens BS-W9 is a bacterium that was isolated from Tidal flat sediment.
NCBI tax id
- NCBI tax id: 1591409
- Matching level: species
strain history
- @ref: 66423
- history: <- J.-S. Lee, KCTC; KCTC 42348 <- J.-H. Yoon, Sungkyunkwan Univ., Republic of Korea; BS-W9
doi: 10.13145/bacdive159597.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Pseudohalocynthiibacter
- species: Pseudohalocynthiibacter aestuariivivens
- full scientific name: Pseudohalocynthiibacter aestuariivivens Won et al. 2015
@ref: 66423
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Pseudohalocynthiibacter
species: Pseudohalocynthiibacter aestuariivivens
full scientific name: Pseudohalocynthiibacter aestuariivivens Won et al. 2015
strain designation: BS-W9
type strain: yes
Isolation, sampling and environmental information
isolation
- @ref: 66423
- sample type: Tidal flat sediment
- geographic location: Boseong
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Tidal flat |
| #Environmental | #Terrestrial | #Sediment |
Safety information
risk assessment
- @ref: 66423
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 66423
- description: Pseudohalocynthiibacter aestuariivivens strain BS-W9 16S ribosomal RNA gene, partial sequence
- accession: KM882610
- length: 1393
- database: ena
- NCBI tax ID: 1591409
Genome sequences
- @ref: 66792
- description: Pseudohalocynthiibacter aestuariivivens BS-W9
- accession: GCA_018457175
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1591409
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 92.791 | no |
| gram-positive | no | 97.855 | no |
| anaerobic | no | 98.78 | no |
| aerobic | yes | 87.377 | no |
| halophile | yes | 85.039 | no |
| spore-forming | no | 96.288 | no |
| thermophile | no | 95.09 | no |
| glucose-util | yes | 51.544 | no |
| motile | no | 79.6 | no |
| glucose-ferment | no | 89.854 | no |
External links
@ref: 66423
culture collection no.: DSM 110604, CECT 8726, KCTC 42348
straininfo link
- @ref: 112073
- straininfo: 397234
literature
- topic: Phylogeny
- Pubmed-ID: 25713042
- title: Pseudohalocynthiibacter aestuariivivens gen. nov., sp. nov., isolated from a tidal flat.
- authors: Won SM, Park S, Park JM, Kim BC, Yoon JH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000128
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66423 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-110604 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110604) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 112073 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397234.1 |