Strain identifier

BacDive ID: 159591

Type strain: No

Species: Vibrio ostreicida

Strain Designation: UCD-KL16

Strain history: <- K. Marcello, UCD; UCD-KL16

NCBI tax ID(s): 526588 (species)

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General

@ref: 66417

BacDive-ID: 159591

DSM-Number: 107812

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen

description: Vibrio ostreicida UCD-KL16 is a mesophilic animal pathogen that was isolated from rinse of sea grass leaf.

NCBI tax id

  • NCBI tax id: 526588
  • Matching level: species

strain history

  • @ref: 66417
  • history: <- K. Marcello, UCD; UCD-KL16

doi: 10.13145/bacdive159591.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio ostreicida
  • full scientific name: Vibrio ostreicida Prado et al. 2014

@ref: 66417

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio ostreicida

full scientific name: Vibrio ostreicida Prado et al. 2014

strain designation: UCD-KL16

type strain: no

Morphology

multimedia

  • @ref: 66417
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_107812.jpg
  • caption: DSM 107812 on medium 514f at 25 °C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 66417
  • name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514c
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 66417
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
66417--+---+-------------+

Isolation, sampling and environmental information

isolation

  • @ref: 66417
  • sample type: rinse of sea grass leaf
  • geographic location: Western Coast north of San Fransico
  • country: USA
  • origin.country: USA
  • continent: North America
  • latitude: 38.3332
  • longitude: -123.048

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Aquatic plant
#Host Body-Site#Plant#Leaf (Phyllosphere)

Safety information

risk assessment

  • @ref: 66417
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 66417
  • description: Vibrio ostreicida strain UCD-KL16, whole genome shotgun sequencing project
  • accession: MPHM00000000
  • length: 60
  • database: ena
  • NCBI tax ID: 526588

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio ostreicida UCD-KL16GCA_001957165contigncbi526588
66792Vibrio ostreicida UCD-KL162791355468draftimg526588

GC content

  • @ref: 66417
  • GC-content: 45.6
  • method: sequence analysis

External links

@ref: 66417

culture collection no.: DSM 107812

straininfo link

  • @ref: 112067
  • straininfo: 402453

literature

  • topic: Genetics
  • Pubmed-ID: 28360178
  • title: Draft Genome Sequences of Pseudomonas moraviensis UCD-KL30, Vibrio ostreicida UCD-KL16, Colwellia sp. Strain UCD-KL20, Shewanella sp. Strain UCD-KL12, and Shewanella sp. Strain UCD-KL21, Isolated from Seagrass.
  • authors: Lujan KM, Eisen JA, Coil DA
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00023-17
  • year: 2017
  • topic2: Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66417Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107812Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107812)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
112067Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402453.1