Strain identifier
BacDive ID: 159587
Type strain: 
Species: Intestinimonas butyriciproducens
Strain Designation: 27-5-10
Strain history: <- T. Looft, USDA-ARS-NADC; 27-5-10
NCBI tax ID(s): 1297617 (species)
version 8.1 (current version)
General
@ref: 66413
BacDive-ID: 159587
DSM-Number: 104946
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Intestinimonas butyriciproducens 27-5-10 is a mesophilic bacterium that was isolated from Intestinal tract of a three month-old healthy pig.
NCBI tax id
- NCBI tax id: 1297617
- Matching level: species
strain history
- @ref: 66413
- history: <- T. Looft, USDA-ARS-NADC; 27-5-10
doi: 10.13145/bacdive159587.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Intestinimonas
- species: Intestinimonas butyriciproducens
- full scientific name: Intestinimonas butyriciproducens Kläring et al. 2013
@ref: 66413
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Oscillospiraceae
genus: Intestinimonas
species: Intestinimonas butyriciproducens
full scientific name: Intestinimonas butyriciproducens Kläring et al. 2013
strain designation: 27-5-10
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 66413 | BHI MEDIUM (DSMZ Medium 215) | yes | https://mediadive.dsmz.de/medium/215 | Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water |
| 66413 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 66413
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66413
- sample type: Intestinal tract (ileal mucosa) of a three month-old healthy pig
- country: USA
- origin.country: USA
- continent: North America
- latitude: 42.0308
- longitude: -93.6319
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Suidae (Pig,Swine) |
| #Host Body-Site | #Gastrointestinal tract |
taxonmaps
- @ref: 69479
- File name: preview.99_984.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_91;96_569;97_661;98_767;99_984&stattab=map
- Last taxonomy: Intestinimonas butyriciproducens subclade
- 16S sequence: MN537471
- Sequence Identity:
- Total samples: 73691
- soil counts: 249
- aquatic counts: 463
- animal counts: 72859
- plant counts: 120
Safety information
risk assessment
- @ref: 66413
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 66413
- description: Intestinimonas butyriciproducens strain DSM 104946 16S ribosomal RNA gene, partial sequence
- accession: MN537471
- length: 1426
- database: ena
- NCBI tax ID: 1297617
Genome sequences
- @ref: 66792
- description: Intestinimonas butyriciproducens 27-5-10
- accession: GCA_001940005
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1297617
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 95.02 | no |
| gram-positive | yes | 70.322 | no |
| anaerobic | yes | 99.261 | no |
| halophile | no | 92.273 | no |
| spore-forming | yes | 53.139 | no |
| glucose-util | yes | 82.732 | no |
| aerobic | no | 97.104 | no |
| thermophile | no | 96.883 | yes |
| motile | no | 90.402 | no |
| glucose-ferment | no | 50 | no |
External links
@ref: 66413
culture collection no.: DSM 104946
straininfo link
- @ref: 112063
- straininfo: 397157
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66413 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-104946 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104946) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 112063 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397157.1 |