Strain identifier
BacDive ID: 159581
Type strain: 
Species: Anaerosalibacter bizertensis
Strain Designation: Med78-601-WT-4W-RMD-3
Strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;
NCBI tax ID(s): 932217 (species)
version 9.1 (current version)
General
@ref: 66407
BacDive-ID: 159581
DSM-Number: 106491
keywords: genome sequence, 16S sequence, Bacteria, anaerobe
description: Anaerosalibacter bizertensis Med78-601-WT-4W-RMD-3 is an anaerobe bacterium that was isolated from feces; pig, 12 month old, wild type.
NCBI tax id
- NCBI tax id: 932217
- Matching level: species
strain history
- @ref: 66407
- history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;
doi: 10.13145/bacdive159581.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Tissierellales
- family: Tissierellaceae
- genus: Anaerosalibacter
- species: Anaerosalibacter bizertensis
- full scientific name: Anaerosalibacter bizertensis Rezgui et al. 2012
@ref: 66407
domain: Bacteria
phylum: Firmicutes
class: Tissierellia
order: Eubacteriales
family: Tissierellaceae
genus: Anaerosalibacter
species: Anaerosalibacter bizertensis
full scientific name: Anaerosalibacter bizertensis Rezgui et al. 2012
strain designation: Med78-601-WT-4W-RMD-3
type strain: no
Culture and growth conditions
culture medium
- @ref: 66407
- name: BHI MEDIUM (DSMZ Medium 215)
- growth: yes
- link: https://mediadive.dsmz.de/medium/215
- composition: Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
culture temp
- @ref: 66407
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 92.404
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68380 | 16199 | urea | - | hydrolysis |
| 68380 | 29016 | arginine | - | hydrolysis |
| 68380 | 16024 | D-mannose | - | fermentation |
| 68380 | 16634 | raffinose | - | fermentation |
| 68380 | 29985 | L-glutamate | - | degradation |
| 68380 | 17632 | nitrate | - | reduction |
| 68380 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68380 | serine arylamidase | - | |
| 68380 | glutamyl-glutamate arylamidase | - | |
| 68380 | histidine arylamidase | - | |
| 68380 | glycin arylamidase | - | |
| 68380 | alanine arylamidase | - | 3.4.11.2 |
| 68380 | tyrosine arylamidase | - | |
| 68380 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
| 68380 | leucine arylamidase | - | 3.4.11.1 |
| 68380 | phenylalanine arylamidase | - | |
| 68380 | leucyl glycin arylamidase | + | 3.4.11.1 |
| 68380 | proline-arylamidase | - | 3.4.11.5 |
| 68380 | L-arginine arylamidase | - | |
| 68380 | alkaline phosphatase | - | 3.1.3.1 |
| 68380 | tryptophan deaminase | - | 4.1.99.1 |
| 68380 | alpha-fucosidase | - | 3.2.1.51 |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 68380 | beta-glucuronidase | - | 3.2.1.31 |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 |
| 68380 | beta-glucosidase | - | 3.2.1.21 |
| 68380 | alpha-glucosidase | - | 3.2.1.20 |
| 68380 | beta-Galactosidase 6-phosphate | - | |
| 68380 | beta-galactosidase | - | 3.2.1.23 |
| 68380 | alpha-galactosidase | - | 3.2.1.22 |
| 68380 | arginine dihydrolase | - | 3.5.3.6 |
| 68380 | urease | - | 3.5.1.5 |
API rID32A
| @ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66407 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 66407
- sample type: feces; pig, 12 month old, wild type
- geographic location: Kranzberg (Bavaria)
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_122820.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_207;96_724;97_847;98_987;99_122820&stattab=map
- Last taxonomy: Anaerosalibacter bizertensis
- 16S sequence: MN537514
- Sequence Identity:
- Total samples: 594
- soil counts: 190
- aquatic counts: 45
- animal counts: 353
- plant counts: 6
Sequence information
16S sequences
- @ref: 66407
- description: Anaerosalibacter bizertensis strain DSM 106491 16S ribosomal RNA gene, partial sequence
- accession: MN537514
- length: 1493
- database: nuccore
- NCBI tax ID: 932217
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Anaerosalibacter bizertensis Med78-601-WT-4W-RMD-3 | GCA_009696605 | contig | ncbi | 932217 |
| 66792 | Anaerosalibacter bizertensis strain Med78-601-WT-4W-RMD-3 | 932217.3 | wgs | patric | 932217 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 65.794 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 92.404 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 97.19 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 60.153 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 82.563 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 70.636 | no |
External links
@ref: 66407
culture collection no.: DSM 106491
straininfo link
- @ref: 112057
- straininfo: 399759
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66407 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-106491 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106491) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68380 | Automatically annotated from API rID32A | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 112057 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399759.1 |