Strain identifier

BacDive ID: 159579

Type strain: Yes

Species: Nonomuraea diastatica

Strain Designation: KC712

Strain history: <- Nevzat Sahin

NCBI tax ID(s): 1848329 (species)

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General

@ref: 66405

BacDive-ID: 159579

DSM-Number: 102925

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Nonomuraea diastatica KC712 is an aerobe, spore-forming, mesophilic bacterium that was isolated from desert soil.

NCBI tax id

  • NCBI tax id: 1848329
  • Matching level: species

strain history

@refhistory
66405<- N. Sahin, Ondokuz Mayis University, Samsun, Turkey; KC712 <- H. Saygin and N. Sahin; KC712
67771<- Nevzat Sahin

doi: 10.13145/bacdive159579.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Nonomuraea
  • species: Nonomuraea diastatica
  • full scientific name: Nonomuraea diastatica Saygin et al. 2020

@ref: 66405

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptosporangiales

family: Streptosporangiaceae

genus: Nonomuraea

species: Nonomuraea diastatica

full scientific name: Nonomuraea diastatica Saygin et al. 2019

strain designation: KC712

type strain: yes

Morphology

cell morphology

  • @ref: 69554
  • gram stain: positive
  • motility: no

multimedia

  • @ref: 66405
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102925.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66405N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://mediadive.dsmz.de/medium/554Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
66405GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
66405positivegrowth28mesophilic
67771positivegrowth28mesophilic
69554positivegrowth28-37mesophilic
69554positiveoptimum28mesophilic

culture pH

@refabilitytypepH
69554positivegrowth6.0-8.0
69554positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
67771aerobe
69554aerobe

spore formation

  • @ref: 69554
  • spore description: Aerial hyphae bear clusters of oval spores
  • type of spore: spore
  • spore formation: yes

halophily

  • @ref: 69554
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-4 %(w/v)

observation

@refobservation
69554The polar lipid profile includes diphosphatidylglycerol, phosphatidylmonomethylethanolamine, phosphatidylethanolamine, hydroxy-phosphatidylethanolamine, dihydroxy-phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, three unidentified glycophospholipids, an unidentified phospholipid and three unidentified lipids.
69554Whole-cell hydrolysates contain meso-A 2pm, glucose, mannose, madurose, ribose and galactose
69554Good growth occurs on ISP 2, modified Bennett's, Czapek's, tryptic soy and nutrient agar, moderate growth on ISP 4, 5 and 7 agar and weak growth on ISP 6 agar substrate mycelia may be brown or cream, not produce diffusible or melanoid pigments.

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6955417108D-arabinose-carbon source
6955415824D-fructose-carbon source
6955412936D-galactose-carbon source
6955417924D-sorbitol-carbon source
6955465327D-xylose-carbon source
6955423652dextrin-carbon source
6955415443inulin-carbon source
6955430849L-arabinose-carbon source
6955418050L-glutamine-carbon source
6955462345L-rhamnose-carbon source
6955417266L-sorbose-carbon source
6955417306maltose-carbon source
695546731melezitose-carbon source
6955428053melibiose-carbon source
6955417268myo-inositol-carbon source
6955417992sucrose-carbon source
6955417151xylitol-carbon source
6955416708adenine-degradation
69554casein-degradation
6955417029chitin-degradation
6955416235guanine-degradation
6955453423tween 40-degradation
6955453426tween 80-degradation
6955415318xanthine-degradation
6955437166xylan-degradation
6955417108D-arabinose-energy source
6955415824D-fructose-energy source
6955412936D-galactose-energy source
6955416024D-mannose-energy source
6955417924D-sorbitol-energy source
6955465327D-xylose-energy source
6955415443inulin-energy source
6955430849L-arabinose-energy source
6955418050L-glutamine-energy source
6955462345L-rhamnose-energy source
6955417266L-sorbose-energy source
6955417716lactose-energy source
6955417306maltose-energy source
695546731melezitose-energy source
6955417268myo-inositol-energy source
6955417992sucrose-energy source
6955417151xylitol-energy source
6955415676allantoin-hydrolysis
6955416199urea-hydrolysis
6955415971L-histidine-nitrogen source
6955416136hydrogen sulfide-
6955417057cellobiose+carbon source
6955417634D-glucose+carbon source
6955416899D-mannitol+carbon source
6955416024D-mannose+carbon source
6955452071dextran+carbon source
6955416634raffinose+carbon source
6955463675sodium succinate+carbon source
695545291gelatin+degradation
6955417368hypoxanthine+degradation
6955428017starch+degradation
6955437166xylan+degradation
6955417057cellobiose+energy source
6955417634D-glucose+energy source
6955416899D-mannitol+energy source
6955452071dextran+energy source
6955416634raffinose+energy source
6955463675sodium succinate+energy source
6955418305arbutin+hydrolysis
695544853esculin+hydrolysis
69554182404-hydroxy-L-proline+nitrogen source
6955415428glycine+nitrogen source
6955424898isoleucine+nitrogen source
6955416977L-alanine+nitrogen source
6955416467L-arginine+nitrogen source
6955417196L-asparagine+nitrogen source
6955417561L-cysteine+nitrogen source
6955416643L-methionine+nitrogen source
6955417295L-phenylalanine+nitrogen source
6955417203L-proline+nitrogen source
6955417115L-serine+nitrogen source
6955417895L-tyrosine+nitrogen source
6955416414L-valine+nitrogen source
6955417632nitrate+reduction

metabolite production

  • @ref: 69554
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
66405desert soilKarakum Desert, Darvaz (40° 15' 38.13'' N, 58° 26' 20.39'' E)TurkmenistanTKMAsia40.260658.439
67771Desert SoilTurkeyTURAsia
69554desert soil sample collected from the Karakum Desert, Turkmenistan.Karakum DesertTurkmenistanTKMAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Desert
#Environmental#Terrestrial#Soil
#Condition#Xerophilic

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
66405Nonomuraea diastatica strain KC712 16S ribosomal RNA gene, partial sequenceMG7706791480ena1848329
66405Nonomuraea diastatica strain KC712, whole genome shotgun sequencing projectSMKP00000000488ena1848329

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Nonomuraea diastatica KC712GCA_004349015contigncbi1848329
66792Nonomuraea diastatica KC7122866772972draftimg1848329
69554genome sequenceSMKP00000000ncbi1848329

GC content

@refGC-contentmethod
6640570.3sequence analysis
6955470.3genome sequence analysis

External links

@ref: 66405

culture collection no.: DSM 102925, CGMCC 4.7334, KCTC 39776

straininfo link

  • @ref: 112055
  • straininfo: 405819

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny31693475Polyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov.Saygin H, Nouioui I, Ay H, Guven K, Cetin D, Klenk HP, Goodfellow M, Sahin NInt J Syst Evol Microbiol10.1099/ijsem.0.0038082020Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Desert Climate, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Turkmenistan, Vitamin K 2/chemistryTranscriptome
Phylogeny32853131Nonomuraea antri sp. nov., an actinomycete isolated from cave soil in Thailand.Lipun K, Teo WFA, Suksaard P, Pathom-Aree W, Duangmal KInt J Syst Evol Microbiol10.1099/ijsem.0.0044132020Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Caves/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66405Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102925Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102925)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69554Hayrettin Saygin, Imen Nouioui, Hilal Ay, Kiymet Guven, Demet Cetin, Hans-Peter Klen2, Michael Goodfellow and Nevzat SahinPolyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov.10.1099/ijsem.0.003808
112055Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405819.1